Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2076 |
Symbol | |
ID | 6162454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2263738 |
End bp | 2265408 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641664845 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_001791108 |
Protein GI | 171058759 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0086171 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCAACA TCTACGAACA GGACCTGCCG CGCACCGCGG CCAACTACAC CGCGCTCAGC CCGGTGAGTT TTGTCGAGCG CAGCGCCGAG GTGTTCGGCG CGCGCACCGC CGTCATCCAC GGCCGGCGCC GCTACAGCTG GGCGCAGGTG CGCGAGCGCA GCGCGCGGCT GGCGTCGGCC CTGCGTTCGC TGGGCGTCGA GCGCGGCCAC ACCGTCAGCG TGATGCTGCC CAACACGCCG GAGATGGTCG AGGCCCATTA CGCCGTGCCG GCGCTGGGCG CCGTGCTCAA CACCCTCAAC ACCCGGCTCG ACGCCGCCTT GCTGGCCTGG CAGATGAACC ATTGCGAGGC GACGGTGCTG ATCACCGACA GCGAGTTCGC GCCGCTGATG GACAAGGCGC TGGCGCTGCT CAAGAGCCAG CACGGCCGCG AGCTGCGGGT GATCGACGTC TGCGACAGCG AGTTCACGGG CGTGCACGAG CACCTCGGCA CGCACGAATA CGAGGACCTG CTCGCCGCCC ACGTGCCGCT GCACCGCCTC GAAGGCCCGG CCGACGAGTG GGACGCGATC GCGGTCAGCT ACACCAGCGG CACCACCGGC GACCCGAAAG GCGTGGTCAC GCATCACCGC GGCGCCTACC TGAACGCGGT CTGCAACAGC GTCACCTGGA CGATGCCGCA CTTCCCGGTC TACCTCTGGA CGCTGCCGAT GTTCCACTGC AACGGCTGGT GCTTCCCGTG GACGATCGCG GCGCTCGGCG GCACGCACGT CTGCCTGCGC AAGGTCGACG CCCGGGCCAT CCTCGACGCC ATGCGCGAGC ACGCCGTCGA CCACTACTGC GCCGCGCCGA TCGTGCACAG CCTGCTGATC AACGCGCCGG CCGAACTGCG CGAGGGCCTC GGCACCGACC CGACCGGGTC GTCCAGGAAG ATCCGCGGCC TGGTGGCCGG CGCCGCGCCG CCGGCGGCGA TGATCGAAGG CATGCAGCGC ATCGGCTTCG ACATCACCCA CGTCTACGGC CTGACCGAGG TCTACGGCCC GGCCTCGGTG GCGGTCAAGA CGCCCGAATG GGCCGATGCC GACCTGGGCG AGCAGGCCCG CCTGAACGGC CGCCAGGGCG TGCGCTACGT GCTCCAGGAA GGCATGACGG TGATGGACCC CGAGACCATG ACCGAGACGC CGGCCGACGG CCAGACCATG GGCGAGATCA TGTTCCGCGG CAACATCGTC ATGAAGGGCT ACCTGAAGAA CCCGAAGGCG ACGCAGGCTT CGCTCGAAGG CGGCTGGTTC CACACCGGCG ACCTGGCGGT GATGGAGCCC GACCGCTACG TCAAGATCCG CGACCGCAGC AAGGACGTGA TCATCTCGGG CGGCGAGAAC ATCAGCTCGA TCGAGGTCGA GGATGCGCTC TACCGCCACC CCGCGGTGAC GGCCTGCGCG GTGGTGGCCA AGCCCGATCC GAAGTGGGGC GAGACGCCGC TGGCGTACGT CGAGCTGGCC TACGGCGCGC AGGTCACGGC CCCCGAGCTG ATCGCCCATT GCAAGGCGCT GCTGGCGGGC TACAAGGTGC CGCGCGAGAT CCGCTTCGAG CCGATCCCGA AGACATCGAC CGGCAAGATC CAGAAGTTCC AGCTGCGCGA GCGGGCTCGC TCGACGCAGG CTTTCGATTG A
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Protein sequence | MSNIYEQDLP RTAANYTALS PVSFVERSAE VFGARTAVIH GRRRYSWAQV RERSARLASA LRSLGVERGH TVSVMLPNTP EMVEAHYAVP ALGAVLNTLN TRLDAALLAW QMNHCEATVL ITDSEFAPLM DKALALLKSQ HGRELRVIDV CDSEFTGVHE HLGTHEYEDL LAAHVPLHRL EGPADEWDAI AVSYTSGTTG DPKGVVTHHR GAYLNAVCNS VTWTMPHFPV YLWTLPMFHC NGWCFPWTIA ALGGTHVCLR KVDARAILDA MREHAVDHYC AAPIVHSLLI NAPAELREGL GTDPTGSSRK IRGLVAGAAP PAAMIEGMQR IGFDITHVYG LTEVYGPASV AVKTPEWADA DLGEQARLNG RQGVRYVLQE GMTVMDPETM TETPADGQTM GEIMFRGNIV MKGYLKNPKA TQASLEGGWF HTGDLAVMEP DRYVKIRDRS KDVIISGGEN ISSIEVEDAL YRHPAVTACA VVAKPDPKWG ETPLAYVELA YGAQVTAPEL IAHCKALLAG YKVPREIRFE PIPKTSTGKI QKFQLRERAR STQAFD
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