Gene Lcho_2076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2076 
Symbol 
ID6162454 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2263738 
End bp2265408 
Gene Length1671 bp 
Protein Length556 aa 
Translation table11 
GC content69% 
IMG OID641664845 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_001791108 
Protein GI171058759 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0086171 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCAACA TCTACGAACA GGACCTGCCG CGCACCGCGG CCAACTACAC CGCGCTCAGC 
CCGGTGAGTT TTGTCGAGCG CAGCGCCGAG GTGTTCGGCG CGCGCACCGC CGTCATCCAC
GGCCGGCGCC GCTACAGCTG GGCGCAGGTG CGCGAGCGCA GCGCGCGGCT GGCGTCGGCC
CTGCGTTCGC TGGGCGTCGA GCGCGGCCAC ACCGTCAGCG TGATGCTGCC CAACACGCCG
GAGATGGTCG AGGCCCATTA CGCCGTGCCG GCGCTGGGCG CCGTGCTCAA CACCCTCAAC
ACCCGGCTCG ACGCCGCCTT GCTGGCCTGG CAGATGAACC ATTGCGAGGC GACGGTGCTG
ATCACCGACA GCGAGTTCGC GCCGCTGATG GACAAGGCGC TGGCGCTGCT CAAGAGCCAG
CACGGCCGCG AGCTGCGGGT GATCGACGTC TGCGACAGCG AGTTCACGGG CGTGCACGAG
CACCTCGGCA CGCACGAATA CGAGGACCTG CTCGCCGCCC ACGTGCCGCT GCACCGCCTC
GAAGGCCCGG CCGACGAGTG GGACGCGATC GCGGTCAGCT ACACCAGCGG CACCACCGGC
GACCCGAAAG GCGTGGTCAC GCATCACCGC GGCGCCTACC TGAACGCGGT CTGCAACAGC
GTCACCTGGA CGATGCCGCA CTTCCCGGTC TACCTCTGGA CGCTGCCGAT GTTCCACTGC
AACGGCTGGT GCTTCCCGTG GACGATCGCG GCGCTCGGCG GCACGCACGT CTGCCTGCGC
AAGGTCGACG CCCGGGCCAT CCTCGACGCC ATGCGCGAGC ACGCCGTCGA CCACTACTGC
GCCGCGCCGA TCGTGCACAG CCTGCTGATC AACGCGCCGG CCGAACTGCG CGAGGGCCTC
GGCACCGACC CGACCGGGTC GTCCAGGAAG ATCCGCGGCC TGGTGGCCGG CGCCGCGCCG
CCGGCGGCGA TGATCGAAGG CATGCAGCGC ATCGGCTTCG ACATCACCCA CGTCTACGGC
CTGACCGAGG TCTACGGCCC GGCCTCGGTG GCGGTCAAGA CGCCCGAATG GGCCGATGCC
GACCTGGGCG AGCAGGCCCG CCTGAACGGC CGCCAGGGCG TGCGCTACGT GCTCCAGGAA
GGCATGACGG TGATGGACCC CGAGACCATG ACCGAGACGC CGGCCGACGG CCAGACCATG
GGCGAGATCA TGTTCCGCGG CAACATCGTC ATGAAGGGCT ACCTGAAGAA CCCGAAGGCG
ACGCAGGCTT CGCTCGAAGG CGGCTGGTTC CACACCGGCG ACCTGGCGGT GATGGAGCCC
GACCGCTACG TCAAGATCCG CGACCGCAGC AAGGACGTGA TCATCTCGGG CGGCGAGAAC
ATCAGCTCGA TCGAGGTCGA GGATGCGCTC TACCGCCACC CCGCGGTGAC GGCCTGCGCG
GTGGTGGCCA AGCCCGATCC GAAGTGGGGC GAGACGCCGC TGGCGTACGT CGAGCTGGCC
TACGGCGCGC AGGTCACGGC CCCCGAGCTG ATCGCCCATT GCAAGGCGCT GCTGGCGGGC
TACAAGGTGC CGCGCGAGAT CCGCTTCGAG CCGATCCCGA AGACATCGAC CGGCAAGATC
CAGAAGTTCC AGCTGCGCGA GCGGGCTCGC TCGACGCAGG CTTTCGATTG A
 
Protein sequence
MSNIYEQDLP RTAANYTALS PVSFVERSAE VFGARTAVIH GRRRYSWAQV RERSARLASA 
LRSLGVERGH TVSVMLPNTP EMVEAHYAVP ALGAVLNTLN TRLDAALLAW QMNHCEATVL
ITDSEFAPLM DKALALLKSQ HGRELRVIDV CDSEFTGVHE HLGTHEYEDL LAAHVPLHRL
EGPADEWDAI AVSYTSGTTG DPKGVVTHHR GAYLNAVCNS VTWTMPHFPV YLWTLPMFHC
NGWCFPWTIA ALGGTHVCLR KVDARAILDA MREHAVDHYC AAPIVHSLLI NAPAELREGL
GTDPTGSSRK IRGLVAGAAP PAAMIEGMQR IGFDITHVYG LTEVYGPASV AVKTPEWADA
DLGEQARLNG RQGVRYVLQE GMTVMDPETM TETPADGQTM GEIMFRGNIV MKGYLKNPKA
TQASLEGGWF HTGDLAVMEP DRYVKIRDRS KDVIISGGEN ISSIEVEDAL YRHPAVTACA
VVAKPDPKWG ETPLAYVELA YGAQVTAPEL IAHCKALLAG YKVPREIRFE PIPKTSTGKI
QKFQLRERAR STQAFD