| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2069 |
|---|
| Symbol | |
|---|
| ID | 6163528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2249604 |
|---|
| End bp | 2251289 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641664838 |
|---|
| Product | electron-transferring-flavoprotein dehydrogenase |
|---|
| Protein accession | YP_001791101 |
|---|
| Protein GI | 171058752 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00388318 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCGC AGGAGATCCT GGCCCAGTTC GGCCCACGTG AATCGATGGA ATACGACGTG
GTGATCGTCG GCGCCGGCCC GGCAGGCCTG TCGGCCGCGA TCCACCTCAA GCAGCTGGCG
TCGGCCCAGG GCCGGGAGGT GTCGGTGGTG GTGCTCGAAA AAGGCTCCGA GCCGGGCGCC
CACATCCTGT CGGGCGCGGT CATGGATCCG ATCGCGATCA ACGAGCTGCT GCCCGACTGG
AAGGCGCTCG GCGCGCCGCT GAACCAGGCC GTCACCGACG ACGAGGTGCT GTTCCTGTCC
GAGACCGGTG CCACCCGCAC GCCCAAGGCG CTGATCCCGA ACTGCTTCCA CAACGAAGGC
AACTACATCG TCAGCCTCGG CAACGTGGTG CGCTGGCTGG CGCAGCAGGC CGAAGGCCTG
GGCGTGGAGA TCTTCCCCGG CTTCGCCGCC GCCGAGGTGC TGTACGACGC CGATGGCGCC
GTCAAGGGCG TGGCCACCGG CAACATGGGC GTGGGCCGCG ACGGCGAGCC TGGCGACAAC
TTCCAGCTCG GCATGGAACT GCTGGGCAAG TACACCTTCT TTGCCGAAGG CGCGCGCGGC
CACCTCGGCA AGCAGCTGAT CGCCAAGTTC GACCTCGACG ACGGCCGCGA TCCGCAGAGC
TACGGCCTGG GCATCAAGGA GCTGTGGGAG ATCGACCCCG CCAGGTCGAA GCCCGGCCTG
GTGGTTCACA CCGCCGGCTG GCCGATGGCG AGCGACACCT ACGGCGGCGG TTTTCTCTAC
CACCTCGACG ACAACAAGGT CACGCTCGGC TTCGTCACCG GGCTCGACTA CAAGAACCCG
TGGCTGAGCC CGTTCGAGGA AATGCAGCGC TGGAAGACCC ATCCCAGCAT CCGCCAGCAC
CTCGAAGGCG GCAAGCGCCT GAGCTACGGC GCCCGCGCCA TCACCGCCGG CGGGCTGCTG
AGCCTGCCCA AGACGGTGTT CCCGGGCGGC GCGCTGATCG GCTGCGACGC CGGCTACCTG
AACGCCTCGC GCATCAAGGG CAGCCACGCG GCGATCAAGT CCGGCATGCT GGCCGCGGCA
GCCGCCTTCG AGGCGCTGGC CGCCGGGCGT GAGCACGACG AGCTGGCGGC CTACCCGGCC
GCCTTCGAGC AGAGCTGGCT GCATGCCGAA CTGCACCAGT CGCGCAACTT CAAGCAGTGG
TTCAAGAAGG GCATCGTGGT CGGCTCGATC ATGACCGGCG TCGAGCAGTG GCTGCTGCCG
CGCCTGGGCG TCAAGAGCCC GCCGTGGACG ATCCACCGCA CCCTGCCCGA CCATGCCGGC
CTCAAGCCCG CGGCCGAGTG CCAGCGCATC GACTACCCCA AGCCCGACGG CCGGCTGACC
TTCGATCGGC TGAGCTCGGT GTTCGTCAGC AACACCAACC ACGAAGAACA GCAACCCGCC
CACCTGACGC TCAAGGACGC CCGGGTGCCC GTGCAGACCA ACCTGGCGCG TTTCGCCGGC
CCGGAAAGCC GCTACTGCCC GGCCGGCGTG TACGAGTTCG TCAAGGCCGA AGACGGCGCC
GACCGGTTGC AGATCAACGC GCAGAACTGC GTGCACTGCA AGACCTGCGA CATCAAAGAT
CCGACGCAGA ACATCGTCTG GATCACGCCC GAAGGCGGCG GCGGTCCGAA CTACGCCAGC
ATGTGA
|
|---|
| Protein sequence | MSPQEILAQF GPRESMEYDV VIVGAGPAGL SAAIHLKQLA SAQGREVSVV VLEKGSEPGA
HILSGAVMDP IAINELLPDW KALGAPLNQA VTDDEVLFLS ETGATRTPKA LIPNCFHNEG
NYIVSLGNVV RWLAQQAEGL GVEIFPGFAA AEVLYDADGA VKGVATGNMG VGRDGEPGDN
FQLGMELLGK YTFFAEGARG HLGKQLIAKF DLDDGRDPQS YGLGIKELWE IDPARSKPGL
VVHTAGWPMA SDTYGGGFLY HLDDNKVTLG FVTGLDYKNP WLSPFEEMQR WKTHPSIRQH
LEGGKRLSYG ARAITAGGLL SLPKTVFPGG ALIGCDAGYL NASRIKGSHA AIKSGMLAAA
AAFEALAAGR EHDELAAYPA AFEQSWLHAE LHQSRNFKQW FKKGIVVGSI MTGVEQWLLP
RLGVKSPPWT IHRTLPDHAG LKPAAECQRI DYPKPDGRLT FDRLSSVFVS NTNHEEQQPA
HLTLKDARVP VQTNLARFAG PESRYCPAGV YEFVKAEDGA DRLQINAQNC VHCKTCDIKD
PTQNIVWITP EGGGGPNYAS M
|
|---|
| |