| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2068 |
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| Symbol | |
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| ID | 6162832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2247103 |
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| End bp | 2249292 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664837 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001791100 |
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| Protein GI | 171058751 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0150667 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCGG CTCATCTCTC GTCATCACCC ACCGCCGAGC GGGCATGTGC CGACGAAGCG
CTGGCGCAGC TCACGCAGCA GCTGCAACTC GAGCGCGCCG CGCGCACCCG AGCCGAAGAA
CAGCTGGATC TGCGCAACCA TGAACTGGAC GAGGCCCTGC GCCAGCGTCA CGACAGCGAG
CACCGGCTGC GCCTGGCGCT GGCCGGCAGC CGCAAGGGCG TCTGGAACTG GGATGCCGAC
AGCGATCTGG TGCGCATCGA TTCGTTCGAG TTCGACGACA AGCCGCTGCC GATGACGTGT
TCGTCCTCGG GTCTGGCCGA ACTGGTGCAT GCCGACGATG TCGACGCCCT GCGCATGGCG
TGGCGCCTGC ACATGAGCGG CGCACGCCCG GATCTCGACA TGTCGTTCCG GCTGTGCCTG
GGCGAGCACG TGCGCTGGGT GCGGGTGCGC GGCAGTGCGC TCGAGCGCGA CGGCAAGGGC
CTGGCCCGGC GCATGACCGG CACGATCAAG GACGTCACCT CGCAGCGCCA TGCCGAACAG
TCGCTGCGGC TGATGGCGCA TGCGTTCTCG AGCACGCGCG ACGCGCTGGT CGTGACCGAC
CACGACTGGC GCATCGTCGA GGCCAACGAG GCCTACTGCC GCCTCGCCGG CGCCGCGCCC
AACGCCGTGC AGGGCACGGT GCTGACCGAA CGGCTGAACC TGCCGGCCCT GGCGCCGCTG
CCGATCGGCG ACGAAGCGGC CTGGGCCGAA GTCACCGAGA TGCGTCGCCT CGACGGCCTG
CGGGTGCCGG TGGACGTCAC CATCACCACG CTGCCGGGCG ACCACAGCGG CGGCACCTAC
CTGGTGTCGC TCAACGACAT CAGCGAGCAG CGCCGTGTCG AGGCCCGCCT CGAACACCTG
GCGTTGTCGG ACGCGGTCAC CGGCCTGCCC AACCGCTCGG CGCTCGAGAA CCAGCTGTTG
CGCCAGCTCG ATCGCGAGCA GGCGTTTGCG CTGATGTACC TCGATGTCGA GGGCGTCAAG
GAGGTCAACG ATTCCTTCGG TCACGATGCC GGCGACGACC TGCTGCGCCA GCTGGCCGAT
CGCCTGCGCA CGATCCTGCC GGCCGGCACG TTCATCAGCC GCTGGGGTGG CGACGAGTTC
GTGCTTGTGC TGGCGCCGGG CAGCGGCGAG ACCGAGGTGC GTTCGTGCGC CCAGACCATG
ATCGCCGCGC TCAGCCCGCC GATGAAGGTG TTCCTCAACG AGATCTCGGT GGCGCCGAGC
ATCGGCGCGG TGCTGGTGCC ACGCGACGGT CGGGAGTCCG GCCTGCTGCT GCGCAAGGCC
GACAGCGCGA TGCAGGCGGC CAAGCTGCGC GGACGCGACA GCCTGGCCTT CTACGACGGC
TCGCTCGACA CCGATTCGCA GCGGCGCGTG CGCATGCACA ACCAGCTGCG GCTGGACGCC
GAGCGCAACG GCTTCACCTT CGTCGCCCAG CCCAAGGTCG ATCGCGAGGG CCATGCGGTC
GGCGCCGAGC TGCTGATGCG CTGGCCGACG GCCGCGTTCG GCATGGTGTC GCCGGGCGAG
TTCATCCCGA TGGCCGAGAA GATCGGCCTG ATCGGCCTGA TGGGGCGCCA CGCCCTGCAC
GCCGCGGCGC AGCTGGCCGC GCGCAGCCTG CAGGTGCACC AGCCGCTGCC GGTGGCCGTC
AACCTGTCGC CCAAGCAGCT GCTGCAGCGC GGCCTCGACC GCCAGCTGCT GCTGGCCTGC
GAGCGCGCCG GCGTGGCACC GGCCATGCTC GAGCTCGAGC TCACCGAGTC GGCCCTGGTC
GACAACATGA CCATCATCGA GCCGCTGCTG CAGCGCTTGC GCCAGCACGG CTTCAGCCTG
GCGCTCGACG ACTTCGGCAC CGGCTTCTCG TCGCTGAGCT ACCTGCGCCA CCTGCCGTTC
AACAAGATCA AGATCGACCG CAGCTTCGTG ATGGACATCG ACCACGACCA TCGGGCAGCG
CGGCTGCTGG CGCACATGGT CAAGCTGTGC GGCGCACTCG GCATGTCGAC CGTGGCCGAG
GGGGTCGAAA GCGAGTCGCA GTTCAAGGCG CTGCTCGACC TGGGCGTGCA GGAGTTCCAG
GGCTACTACT TCGCGCGGCC GCTGCCGGTC GACGAATGGG TCGCGCGGCT GTCGGCCCGA
CCCGGCGAGC CGCCGCATCT GCCGACCTGA
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| Protein sequence | MNPAHLSSSP TAERACADEA LAQLTQQLQL ERAARTRAEE QLDLRNHELD EALRQRHDSE
HRLRLALAGS RKGVWNWDAD SDLVRIDSFE FDDKPLPMTC SSSGLAELVH ADDVDALRMA
WRLHMSGARP DLDMSFRLCL GEHVRWVRVR GSALERDGKG LARRMTGTIK DVTSQRHAEQ
SLRLMAHAFS STRDALVVTD HDWRIVEANE AYCRLAGAAP NAVQGTVLTE RLNLPALAPL
PIGDEAAWAE VTEMRRLDGL RVPVDVTITT LPGDHSGGTY LVSLNDISEQ RRVEARLEHL
ALSDAVTGLP NRSALENQLL RQLDREQAFA LMYLDVEGVK EVNDSFGHDA GDDLLRQLAD
RLRTILPAGT FISRWGGDEF VLVLAPGSGE TEVRSCAQTM IAALSPPMKV FLNEISVAPS
IGAVLVPRDG RESGLLLRKA DSAMQAAKLR GRDSLAFYDG SLDTDSQRRV RMHNQLRLDA
ERNGFTFVAQ PKVDREGHAV GAELLMRWPT AAFGMVSPGE FIPMAEKIGL IGLMGRHALH
AAAQLAARSL QVHQPLPVAV NLSPKQLLQR GLDRQLLLAC ERAGVAPAML ELELTESALV
DNMTIIEPLL QRLRQHGFSL ALDDFGTGFS SLSYLRHLPF NKIKIDRSFV MDIDHDHRAA
RLLAHMVKLC GALGMSTVAE GVESESQFKA LLDLGVQEFQ GYYFARPLPV DEWVARLSAR
PGEPPHLPT
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