Gene Lcho_2066 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2066 
Symbol 
ID6162830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2245529 
End bp2246197 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content71% 
IMG OID641664835 
Producthypothetical protein 
Protein accessionYP_001791098 
Protein GI171058749 
COG category[S] Function unknown 
COG ID[COG3132] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0124636 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAGGG ACCTCACGCC GGTCGAGGCG CGCATCGTCG GCGTGCTGGT GGAAAAGCAG 
TCCACCGTGC CCGACACCTA TCCGCTGTCG CTCAACTCGC TGGTGGCGGG CTGCAATCAG 
AAGACCACAC GCGACCCGGT GATGACGCTC ACCGACGCGC AGGTGCTGCT GGCGATCGAC 
GAGCTCAAGA GCCTGCACCT GGTGCTCGAG GGCAGCGGCA GCCGGGTGGT GCGCTATGAA 
CACAACCTCG GCCGCGTGCT CGGCGTGCCC GGTGCCGCGG TGGCGCTGCT GGCCACGCTG 
ATGCTGCGCG GCCCGCAGAC CGCCGCCGAG TTGCGGGCCC ACAGCGAGCG CCTGCACCGC 
TTTGCCGATG TCTCGTCGGT CGAGGGTTTC CTCGACGAGC TGGCGGAAAA ATCGCCGCCG 
CGGGTGCTGA AGCTGCCGCG TGCGCCCGGG GCCCGCGAGG CGCGCTGGGT GCATCTGCTG 
TGCGGCGAGG TCGACGTGGC CGCGCTGTCG GTCGGCGGCG CTGCCAGCCA GATGGCCGGG 
GGCGCTGCCG ACGACGAACT GGCGCTGCTG CGTGCCGAGC ACAAGCAGGT GCTGGCCGAG 
GTGGCGCTGT TGCGCAGCCA GGTGCAGCGC CTGGCCGACG AACTGGGCGT CAACCTCGAC 
CCGGCCTGA
 
Protein sequence
MTRDLTPVEA RIVGVLVEKQ STVPDTYPLS LNSLVAGCNQ KTTRDPVMTL TDAQVLLAID 
ELKSLHLVLE GSGSRVVRYE HNLGRVLGVP GAAVALLATL MLRGPQTAAE LRAHSERLHR 
FADVSSVEGF LDELAEKSPP RVLKLPRAPG AREARWVHLL CGEVDVAALS VGGAASQMAG 
GAADDELALL RAEHKQVLAE VALLRSQVQR LADELGVNLD PA