Gene Lcho_2057 details

Gene Information

• Locus tag: Lcho_2057
• Symbol: smpB
• ID: 6160990
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: -
• Start bp: 2237220
• End bp: 2237684
• Gene Length: 465 bp
• Protein Length: 154 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 641664826
• Product: SsrA-binding protein
• Protein accession: YP_001791089
• Protein GI: 171058740
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.00464392
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAGCATCG CCGAAAACAA GAAAGCTTTT TTCAACTACC ACATCGAAGA GCGCTTCGAA 
GCCGGCATCG TGCTGGCAGG CTGGGAGATC AAGTCGATCC GCTCGGGTCA GATCCAGTTG 
ACCGACGGCT ACGTGGTGAT CAAGGACGGC GAGCTGTTCC TGATCGGCCT GCGCATCAAC 
GCGCTGCGCA GCGCCTCCAC GCACGTCAAC CCCGAGCCCG ACCGCACCAA GAAGCTCCTG 
ATGCACAAGG CCGAGATCCG CCGCCTGATC GGCAAGGTCG AGCAGAAGGG CCACACGCTG 
GTGCCGCTGA ACCTGCACTA CAAGGGCGGC CGCGTGAAGG TGGACGTGGC GCTGGCCAAG 
GGCAAGGCCG AACACGACAA GCGCCACACC ATCAAGGACC GCGACTGGCA GCGCGAACAG 
GGCCGGCTGA TGCGCCACAA GGTGTCGGCG CCGCACAAGG ACTGA 

 

Protein sequence

MSIAENKKAF FNYHIEERFE AGIVLAGWEI KSIRSGQIQL TDGYVVIKDG ELFLIGLRIN 
ALRSASTHVN PEPDRTKKLL MHKAEIRRLI GKVEQKGHTL VPLNLHYKGG RVKVDVALAK 
GKAEHDKRHT IKDRDWQREQ GRLMRHKVSA PHKD