Gene Lcho_2053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2053 
Symbol 
ID6160589 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2231094 
End bp2232533 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content71% 
IMG OID641664822 
Producthypothetical protein 
Protein accessionYP_001791085 
Protein GI171058736 
COG category[S] Function unknown 
COG ID[COG1322] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.000533469 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCCTCGC TGTCCTCGAT GTTGCTGATC GTTCTCGCCG TGCTCGGCGG GCTGAACCTG 
TTTGTGCTGG TTCAGCTGCT GCGCCAGACC GGCTCGGACC AGGATCCCGA CAGCCAATGG
CAGTGGCTGC AGACCACCTT GACGGCGCTG CAGCGCGATC AGCACAGTGG CGCCGAGCGC
ACCGAGCGTG AACTGCGCGG CGCCGTGCTG GCCGCCGCGC GCGACACCCG GGTCGAACTC
GGTGGCGGGC TGGCCGAGTT CCAGCGGCTG CTGATGGCGC AATCGGGCGA GGTGGCGCGC
ACGCAGAACG AGCAGATCGA CTCGTTTCGC ATCCAGCTGG CCGCGATGCA GACCGGCCTC
GACCAGCGCC TGGCCGGCCT GCAGGGGGGC ATCGAGCAGC GGCTGGTGTC GATGCAGGGC
AGCGTCGAGC AGCGCTTGAG CAATCTGCAG GGCGGTGTCG AGCAGCGCCT GGCCAGCCTG
CAGGCCGACA ACGAGAAGAA GCTCGACCAG ATGCGCGCCA CGGTCGACGA GAAGCTGCAC
GCCACGCTGG AGGCGCGGCT GGGCGAGAGC TTCAAGCAGG TCGCCGAGCG GCTCGAGCAG
GTGCACCGCG GCCTGGGTGA GATGCAGACG CTGGCGCAGG GCGTGGGCGA CCTCAAGCGC
GTGCTGACCA ACGTGAAGGC GCGCGGCGTG TTCGGCGAGG TGCAGCTCGC CGGCCTGCTG
GAGCAGGTGC TGACGCACGA GCAGTACGCC GTCAACGTGG CCACCGTGCC GGGCAGCAAC
GAGCGGGTGG AGTTCGCGAT CCGCCTGCCC GGCCGCGCGG TGGGCGGGGC GCCGGATGCG
CCGGTCTGGC TGCCGATCGA CGCCAAATTC CCGCGCGAGG ACTACGAACG TTTGCTCGAC
GCCCACGACC GCGCCGACCG CGAGGCGGCC GAGGCAGCGG CCAAGGCGCT CGAGCAGCGC
ATCCGCGACG AGGCCCGCAG CATCGCCGCC AAATACCTGG CGCCGCCGCA CACCACCGAT
TTCGCGATCC TGTTCCTGCC CACCGAGGGC CTGTACGCCG AGCTGCTGCG CCGCCCCGGT
CTGACCGAGG CGCTGCAGCG CCAGCACCGC GTCACGCTGG CCGGGCCGAC CACGCTGCTG
GCGATGCTCA ACAGCCTGCA GATGGGCTTT CGCACGCTGG CGCTGGAGCA GCGCAGCTCG
GAGGTCTGGA GCGTGCTGGG CGCCGTCAAG ACCGAGTTCG CCAAGTTCGG CGACGTGCTG
GCCAAGACCA AGAAGAAGCT GCTCGAGGCG CACAACACCA TCGACGACGC CGAGGTGCGC
GCGCGCTCGA TGGCGCGCAA GCTCAAGTCG GTGGAGGCGC TGCCCGAGCC CGAGGCGCGC
GCGCTGTTGC CGGTCGAGTC CGGCGTGGCG CGGGATGGCG ACGCGGCAAC GGCCGGCTGA
 
Protein sequence
MPSLSSMLLI VLAVLGGLNL FVLVQLLRQT GSDQDPDSQW QWLQTTLTAL QRDQHSGAER 
TERELRGAVL AAARDTRVEL GGGLAEFQRL LMAQSGEVAR TQNEQIDSFR IQLAAMQTGL
DQRLAGLQGG IEQRLVSMQG SVEQRLSNLQ GGVEQRLASL QADNEKKLDQ MRATVDEKLH
ATLEARLGES FKQVAERLEQ VHRGLGEMQT LAQGVGDLKR VLTNVKARGV FGEVQLAGLL
EQVLTHEQYA VNVATVPGSN ERVEFAIRLP GRAVGGAPDA PVWLPIDAKF PREDYERLLD
AHDRADREAA EAAAKALEQR IRDEARSIAA KYLAPPHTTD FAILFLPTEG LYAELLRRPG
LTEALQRQHR VTLAGPTTLL AMLNSLQMGF RTLALEQRSS EVWSVLGAVK TEFAKFGDVL
AKTKKKLLEA HNTIDDAEVR ARSMARKLKS VEALPEPEAR ALLPVESGVA RDGDAATAG