| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2050 |
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| Symbol | |
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| ID | 6163496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2228869 |
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| End bp | 2230104 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 641664819 |
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| Product | CzcC family heavy metal RND efflux outer membrane protein |
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| Protein accession | YP_001791082 |
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| Protein GI | 171058733 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00202753 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTTCACA CACTTTGCCG CCTGCGCGTC GCCGTCGCGC TGGCCTTCGG CCTGCCGACA
CTCGCCGTCG CAGGCTTGAG CTACGACGAA ACCACCCGGC TGGCACGCGA CCAGGCACCG
GCCCTGCTCG CGCAGCGCAG CGCGCTGGCC GGCGCCGAGG CGGTGCAACC GGCTGCCGCC
ACCTTGCCCG ATCCGCGCCT GACGCTGGGC GTCGACAACC TGCCCGTCAG CGGCGCCGAC
CGCTGGAGTC TGACGCGCGA CTTCATGACC ATGCAGCGCA TCGGCCTGAT GCAGGAGGTG
CCCAACGGCG CCCGCCGCGA AGCCCGCGCA GCCGGCGCCC AGGCCCGCAT CGAACGTGAG
CGGGCGATGC TGGCCGTGGC CGAACTGACC GTGCGACGCG AAGCCGCGCT GGCCTGGCTG
GGCGTGCACT TTGCCGAACG CCGCGCCGCG CAGCTGCGCG ATCTGACGAC CGAGAACCAG
CTGCTGATCG ACACCCTGGG CGCGCGCATC ACCGCCGGCC AGGCCCTGCC GGCCGAGCGC
ACGATGGCGC GCCAGGAAGG CCTGGCACTG GCCGACCGCC ACGACGATGC GCAGCGCGAC
ATCGCCAAAG CCCGCTCGGC GCTGCGCCGC TGGGTTGGCG CACGGGCCGA CGAACCGCTC
GACGGCGACC CGCCCGCGCT GGCCCAGTCG GGCGACGAAG TGCGCGCGCA GATCCACCGC
CACGCCGAGA TCGCGCCCTA TGCGGCGATG CAGGCGATGG CGCAGGCCGA GGCCCGCGAG
GCCGACGCCG AGCAGCGCGG CGACTGGGCC TGGGAGGTGG CCTACAGCCG CCGCGGCCCG
CAGTACGGCG ACATGGTGTC GTTCCAGTTC AGCTTCGACC TGCCGTGGGC GCGCGATCGG
CGCCAGCGCC CGATGCTGGC CGGCAAGCAG CAGGACATCG CCCGCATCGA GGCCGAACGC
GAGGACACGA TCCGCCGCCA CGGCGAGGAG ATCGAGGCCC AGCTCGCCGA GCTGGCCGCA
CTCGACGCGC AGCGTGCGCG CCTGGTCGAC AGCGGCCTGC CGCTGGCCGA CGAGCGCATC
GCGCTGGCGC TGGCCAGCTA CCAGGGCGGC CGCGGCATGC TGGCCGACGT GCTGATGGCG
CGCCGCGAAG CGGTCGAAAC CCGCCTGCGC CTGATCGAGC TCGACGCCCA GCGCCTGGCG
CTGCAGGTGC GCCTCAACAC TTTGATCGCG GAGTGA
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| Protein sequence | MVHTLCRLRV AVALAFGLPT LAVAGLSYDE TTRLARDQAP ALLAQRSALA GAEAVQPAAA
TLPDPRLTLG VDNLPVSGAD RWSLTRDFMT MQRIGLMQEV PNGARREARA AGAQARIERE
RAMLAVAELT VRREAALAWL GVHFAERRAA QLRDLTTENQ LLIDTLGARI TAGQALPAER
TMARQEGLAL ADRHDDAQRD IAKARSALRR WVGARADEPL DGDPPALAQS GDEVRAQIHR
HAEIAPYAAM QAMAQAEARE ADAEQRGDWA WEVAYSRRGP QYGDMVSFQF SFDLPWARDR
RQRPMLAGKQ QDIARIEAER EDTIRRHGEE IEAQLAELAA LDAQRARLVD SGLPLADERI
ALALASYQGG RGMLADVLMA RREAVETRLR LIELDAQRLA LQVRLNTLIA E
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