Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_2049 |
Symbol | |
ID | 6163495 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2227292 |
End bp | 2228863 |
Gene Length | 1572 bp |
Protein Length | 523 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641664818 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001791081 |
Protein GI | 171058732 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG0845] Membrane-fusion protein [COG5569] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.00264035 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACACCC GACTCAAATC TCTCGTCGCA GCCCTCATGC TGCTCGGCCT CGGCGGCGCG GCCGGCTGGG GCATCAGCCA GTGGCGCACC GGTGCATCGG CACAGACCGC CGCGTCCGAC ACGGCGGCAC CGACCGCCGA GCGCAAGGTG CTGTATTGGT ACGACCCGAT GGTGCCCACG CAGAAGTTCG ACCAGCCCGG CAAGTCGCCG TTCATGGACA TGCAGCTGGT GCCGCGTTAC GCCGACGAGG CCGACGCCGG TGCCGACAGC GGCGCCGCAC TCGCCGTCTC GACCCAGGCC CGGCAGGCGC TCGGCCTGCG GCTGGCGACG GTCGAAAAGC GCCCGATCGG CGCCGCCATC GAGGTGGTCG GCACGGTGCA GCTCAACGAG CGCGACATCA GCATCGTGCA GGCACGCACC GCCGGTTTCG TCGAACGGGT CTACGCCCGC GCACCCGGCG ACGTGATTGC AGCGGGTGCG CCGCTGGTCG ATCTGCTGAA CCCCGAGTGG CTCGGCGCGC AGCACGAATA CCTGGCCGTC AAGGCCACCG GCGACGCCGC GATGACGCAG GCGGCGCGCG CCCGGCTGGT GCTGCTGGGC ATGCCGGCGG CGCTGATCGA GCAGGTCGAG CGCAGCGGCC AGCCGGCGGC GGTGCAGACC CTCGTCGCGC CGGGCGGCGG TGTCATCAGC GAGCTGATGG TGCGCCAGGG CATGACGGTG TCGGCCGGCA TGACGCTGGC GCGCATCAAC GGCCTGGCCA CGGTCTGGCT GGAGGCGGCC TTGCCCGAGG CGCAGGCGGC GACGATCCGC ACCGGCCAGG CGGTCGAGGT GCGTTTCCCG GCGCTGCCGG GCGAGGTGGT GCGCGGCAAG GTCGCGGCGG TGCTGCCCGA GGCAGACCGC GAAACACGCA CGCTGCGCTT GCGCATCGAG CTGCCGAATC CGAAGCAGCG CCTGCGCGCC GGCCTGTTCG CGCAGGTCAG CCTGCGCGCC GCACAAGGCG AGGCGCTGAT GGTGCCGGCC GAGGCGGTGA TCCGCACCGG CCGGCGCGCG CTGGTCTACC TGTCGGAGCA GCCGGGGCAC TTCCGCCCGG TCGAGGTCGA GATCGGCGAG CAGTTCGATG AATACATCGT CGTGCGCAGC GGCCTCGCCG CCGGGCAGCA GGTGGTGGCG TCAGGGCAGT TCCTGGTCGA CTCGGAAGCC AGCTTGCAGG GCGTGATGGC GCGCAGCGCG CCACCTGCGG CCAGCGCCGC CGTCACGCCG GTGGCAGAGG CCCCGGTGTA CCGCACGACC GGCGTCGTCG TCGAGACCGA CTCGGGCTCG ATCACGCTCG AACACGCGCC GGTGCCGGCG CTGAAATGGC CGGGCATGAC GATGCCGTTC AAGGTCACCG ACCCGAAGCT GCTGAAGGGG CTCAAGCCCG GCCAGGCGGT ACGTTTCGGC TTCGACCAGC ACGGCGACGA CTACCGCCTG ACCGAGATCG CACCGGCCAC GGCCGCATCC GGCAGCGTCG ACGCCGACCC GCACGCCGGC CATCGCGCCC CGGCCGTTGC CGCCTCGGGA GCACAACGAT GA
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Protein sequence | MNTRLKSLVA ALMLLGLGGA AGWGISQWRT GASAQTAASD TAAPTAERKV LYWYDPMVPT QKFDQPGKSP FMDMQLVPRY ADEADAGADS GAALAVSTQA RQALGLRLAT VEKRPIGAAI EVVGTVQLNE RDISIVQART AGFVERVYAR APGDVIAAGA PLVDLLNPEW LGAQHEYLAV KATGDAAMTQ AARARLVLLG MPAALIEQVE RSGQPAAVQT LVAPGGGVIS ELMVRQGMTV SAGMTLARIN GLATVWLEAA LPEAQAATIR TGQAVEVRFP ALPGEVVRGK VAAVLPEADR ETRTLRLRIE LPNPKQRLRA GLFAQVSLRA AQGEALMVPA EAVIRTGRRA LVYLSEQPGH FRPVEVEIGE QFDEYIVVRS GLAAGQQVVA SGQFLVDSEA SLQGVMARSA PPAASAAVTP VAEAPVYRTT GVVVETDSGS ITLEHAPVPA LKWPGMTMPF KVTDPKLLKG LKPGQAVRFG FDQHGDDYRL TEIAPATAAS GSVDADPHAG HRAPAVAASG AQR
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