| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2033 |
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| Symbol | |
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| ID | 6162261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2207915 |
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| End bp | 2210140 |
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| Gene Length | 2226 bp |
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| Protein Length | 741 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664802 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001791065 |
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| Protein GI | 171058716 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.240451 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATC ACGCGATGGC CTGGATGCAA CGCGTGATCC GCTTCGGCGC TGGCCTGGTG
CTGGCAGGCC TCACCTTGCT GGCCGGCTGC GACAACAGTC CGCACGGCCC TGGCTCGGCG
GCCTCGAACA CGCTCTACAC CGCGTTCACC GAGCGCTCGC CACGACACCT CGACCCAGTG
GCGTCGTACT GGAACCAGGA CACGCCCTAC ACCTACGGCA TCTACGAGCC GCCGTACACC
TATCACTACC TCAAGCGCCC GTTCACGCTG ATCCCGAAGG TGGCGACCGA GGTGGCGCCG
CCGGTCTATC TGGACAAGAA CGGCCGGCGC CTGGCCGCTG ATGCGCCGGG CGAACAGGTG
GCCGAGAGCG TGTACGAGGT GCGCATCCGC CCCGGCATCC GCTACCAGCC GCACCCGGCG
TTTGCGCAGG ACGCGCAAGG CCGCTACCTG TATCACCAGC TGAGCGCGGC GCAGGTGGGC
GAGCGCACGT CGCCGTGGCA GTTCGAGGTG ACGGGTACGC GCGAACTGGT GGCCGAGGAC
TTCGTCTACG GCCTCAAGCG CCACGCCACC ACGCGGGTGA CCACGCCGAT CTTCGGCATC
TTTGCCGAGT ACATCGTCGG GCTGAAGGAG TACGGCGCGC TGGTCAAGCA GGAGGACGCC
AAGCTGCGCG CCGGGCTCGA TCCGGCCGCA CTCGACAAGC CGTTTCTCGA CTTCCGCCGC
TGGCCACTGG CGGGGGTCAG CGCGCCGGAG AAGCACCTGC TGCGCCTGCG CATCCGCGGC
AAGTATCCGC AGTGGAAATA CTGGATGGCG ATGCCGTTTG CCGCGCCGAT GCCGTGGGAG
GCCGACGCCT TCTACGCCCA GCCGGGCATG GCGCGCAACG GGCTGTCGCT GGACCGCTGG
CCGGTCGGCA CCGGGCCGTT CATGATGGCC GAGTTCGAAC AGGATCGCCG CCACGTGCTG
GTACGCAACC CCAACTACCG CGGCGACCCG TACCCCTGCG AAGGCATGCC CGGCGACCGC
GAGCGCGGCC TGCTCGACGA CTGCGGCAAG CCGACGCCCT TCGTCGACCG GATCGTGTTC
CAGATGGAGC GCGAACAGGT GCCGCTGAAA GCCAAGTTCC GCCAGGGTTT CCTGGACGTG
CCCGAGATCG AGCGCACCGA CCGCGGCGCC GACTATCTGA TCGACATGGA AGACTCGCCC
GAAGCGCGCG CCGAGTACAC CGAGCGCGGC TACCAGCTGC CGCGCGCCGG CGACCTGAGC
ATCTGGTTCA TGGGCTTCAA CATGCTCGAC CCGGTGGTCG GCCGCGGCGA CACGCCCGAG
CAGCAGGCGC GCAATCGCCG GCTGCGCCAG GCGATCTCGA TCGCGCTCGA CTGGGCCGAC
TACAGCAACA TCTTCCCGAA CAAGGGCGGC GTCGAGGCGA TGGGGCCGCT GCCGGCAGGC
ATCTTCGGCT CGCGACAAGG TGCGCTCGAC GGCGTCAATC CGGTCACGCA CCGGGTGGTC
GACGGCAAGA TCGTGCGGCG GCCGATCGAG GACGCGCGCA AGCTGATGGT CGAGGCCGGC
TACCCCGACG GGCGCGACGC CCGCACGGGC CGCCCGCTGG TCATCAACTA CGATTTCTAC
CGCACGCTGA CGCCCGAATT CAAGGCCGAG ATCGATTGGA TGAGCCGCCA GTTCGGCCAG
CTCGGCATCC AGCTCGAGGT GCGCGCCACC GACAACAACC AGTTCCAGGA CAAGGTGCGC
AAGGGCCGGC ATCAGCTGTT CTTCTCGGGC TGGCTGGCCG ATTACCCGGA CGCGGAGAAC
TTCCTGTTCC TGCTCTACGG CCCGAACGGC AAGACCCGCT CGGAGGGCGA GAACACCGCC
AACTACGACA ACCCGGCCTT CGACCGGCTG TTCCAGCAGC TCAAGGATCT GGACGACGGG
CCGCCCAAGC AGGCGCTGAT CGACCGCATG GTGGCGCTGC TGCAGGACGA CGCGCCGTGG
ATCTGGGGCT ACATCCCCGA CGCCACCGGC GCCTTCCAGC CCTGGGTGCG CAACGCGGTG
GTGCCGGTGC TGATCAAGGA TCACCTGCGT TTCTACCGCG TCGACACGGC GCTGCGCACG
CGGCTGCAGC GGGCCTGGAA CCGGCCGGTC GGCTGGCCGC TGATGCTCGC GGGCGTGGCG
CTGCTGGCGC TGGTCTGGTT CGGCTGGCGC AGCTGGCGAG CGCGTGAACG AGCGACGGCG
CGATGA
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| Protein sequence | MADHAMAWMQ RVIRFGAGLV LAGLTLLAGC DNSPHGPGSA ASNTLYTAFT ERSPRHLDPV
ASYWNQDTPY TYGIYEPPYT YHYLKRPFTL IPKVATEVAP PVYLDKNGRR LAADAPGEQV
AESVYEVRIR PGIRYQPHPA FAQDAQGRYL YHQLSAAQVG ERTSPWQFEV TGTRELVAED
FVYGLKRHAT TRVTTPIFGI FAEYIVGLKE YGALVKQEDA KLRAGLDPAA LDKPFLDFRR
WPLAGVSAPE KHLLRLRIRG KYPQWKYWMA MPFAAPMPWE ADAFYAQPGM ARNGLSLDRW
PVGTGPFMMA EFEQDRRHVL VRNPNYRGDP YPCEGMPGDR ERGLLDDCGK PTPFVDRIVF
QMEREQVPLK AKFRQGFLDV PEIERTDRGA DYLIDMEDSP EARAEYTERG YQLPRAGDLS
IWFMGFNMLD PVVGRGDTPE QQARNRRLRQ AISIALDWAD YSNIFPNKGG VEAMGPLPAG
IFGSRQGALD GVNPVTHRVV DGKIVRRPIE DARKLMVEAG YPDGRDARTG RPLVINYDFY
RTLTPEFKAE IDWMSRQFGQ LGIQLEVRAT DNNQFQDKVR KGRHQLFFSG WLADYPDAEN
FLFLLYGPNG KTRSEGENTA NYDNPAFDRL FQQLKDLDDG PPKQALIDRM VALLQDDAPW
IWGYIPDATG AFQPWVRNAV VPVLIKDHLR FYRVDTALRT RLQRAWNRPV GWPLMLAGVA
LLALVWFGWR SWRARERATA R
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