| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2003 |
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| Symbol | |
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| ID | 6162364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2170440 |
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| End bp | 2171930 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664772 |
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| Product | succinic semialdehyde dehydrogenase |
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| Protein accession | YP_001791035 |
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| Protein GI | 171058686 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0000861925 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACATGA CCACCAACCC GCTGGCACTG CTGAACGACC CCGGCCTGCT CAAGACCGAC
GCGCTGATCG ACGGCGAGTG GATCGCCGGC ACCAGCCGCT TCGACGTCGC CGACCCCGCC
ACCGGCGCCA GGCTGGCGGA CGTGGCGCTG CTGGGCGCGA GCGAAACCGC AGCCGCGATC
GCCGCCGCCA ACGCCGCCTG GCCGGCCTGG CGCGCCAAGA CCGCCAAGGA GCGCGCCGGC
ATCCTGATGA AGTGGTACCA GCTGCTGATC CAGCACGCCG ACGACCTGGC CCGCATCATG
ACCGCCGAGC AGGGCAAGCC GCTGGCCGAG GCGCGCGGCG AGGTGGTCTA CGGCGCCAGC
TTCATCGAGT GGTTTGCCGA AGAAGCCAAG CGCGTTTACG GCGAGACGAT TCCGAGCACC
GACGCCAACA AGCGCTTCAT CGTGCTCAAG CAGCCGATCG GCGTCTGCGC GGCGATCACG
CCGTGGAATT TCCCGATCGC GATGATCACG CGCAAGGTCG CGCCGGCGCT GGCCGCGGGC
TGCCCGGTGA TCATCAAGCC GGCCGAGCAG ACGCCGCTGT CGGCGCTGGC CTGCGCCGAG
CTGGCCCAGC GCGCCGGCAT GCCGCCGGGC GTGCTCAACA TCCTGACCGG TGATGCCGAG
AGCTCGATCG AGATTGGCGG CGTGCTGTGT GCCTCCGACG TGGTGCGCCA CCTGAGCTTC
ACCGGCTCGA CCGAAGTGGG CCGCATCCTG ATGCGCCAGT GCGCGCCGAC GATCAAGAAG
CTTAGCCTCG AACTCGGCGG CAACGCACCC TTCATCGTCT TCGACGACGC CGACATCGAC
AGCGCGGTCG AGGGCGCGAT GGTCAGCAAG TACCGCAACG CCGGCCAGAC CTGCGTCTGC
GCCAACCGGC TGTACGTGCA GGACAGCGTC TACGACGCGT TCGTCGAGAA GCTCGCCGCC
AAGGCCGCGG CGATCAAGGT CGGCAACGGT TTCGAGGCCG GTGTCAACCA GGGGCCGATG
ATCGACGCCC AGGCGCTGGC CAAGGTCGAA TCCCACGTGG CCGATGCCGT CGCCAAGGGT
GCCCGGGTGG TGGTGGGTGG CAGCCGAGGT GCTGGCGCGC TGGGCCAGCG TTTCTACACG
CCGACGGTGC TGTCGGACGT GACCGCCGAG ATGCTCTGCG CGCGCGAGGA AACCTTCGGC
CCGGTGGCGC CGGTGATGCG TTTCAAGACC GAGGCCGAGG CGATCGCGCT GGCCAATGCC
ACCGAGTTCG GTCTGGCGGC TTATTTCTAC AGCCGCGACA TCGGCCGCAT CTTCCGCGTC
GGCGAGGCGA TCGAGGCCGG CATGGTGGGC GTCAACACCG GGCTGATCTC GGTGGCCGAA
GTGCCGTTCG GCGGCGTCAA GCAGTCGGGG CTCGGCCGCG AGGGCTCGCG GCACGGCATC
GAGGATTACG TCGAGATGAA GTACCTGTGC CTGGGCGACA TCCTGCGCTG A
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| Protein sequence | MDMTTNPLAL LNDPGLLKTD ALIDGEWIAG TSRFDVADPA TGARLADVAL LGASETAAAI
AAANAAWPAW RAKTAKERAG ILMKWYQLLI QHADDLARIM TAEQGKPLAE ARGEVVYGAS
FIEWFAEEAK RVYGETIPST DANKRFIVLK QPIGVCAAIT PWNFPIAMIT RKVAPALAAG
CPVIIKPAEQ TPLSALACAE LAQRAGMPPG VLNILTGDAE SSIEIGGVLC ASDVVRHLSF
TGSTEVGRIL MRQCAPTIKK LSLELGGNAP FIVFDDADID SAVEGAMVSK YRNAGQTCVC
ANRLYVQDSV YDAFVEKLAA KAAAIKVGNG FEAGVNQGPM IDAQALAKVE SHVADAVAKG
ARVVVGGSRG AGALGQRFYT PTVLSDVTAE MLCAREETFG PVAPVMRFKT EAEAIALANA
TEFGLAAYFY SRDIGRIFRV GEAIEAGMVG VNTGLISVAE VPFGGVKQSG LGREGSRHGI
EDYVEMKYLC LGDILR
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