Gene Lcho_1997 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1997 
Symbol 
ID6162403 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2163565 
End bp2164266 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content71% 
IMG OID641664766 
ProductCRP/FNR family transcriptional regulator 
Protein accessionYP_001791029 
Protein GI171058680 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.000000121238 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGATTCTCA TGGACATGCC GCGCAGTTCC CTGCGCGCTC ACCTCAACGA CCGCCACCAG 
CCGGACTTCC CGTCACCCCC GCGCCCGATG CGCCGAGACT ATGAACGTGG CGAACAGGTC
CTGCGCGCCG GCGGCAGCGC GGTGCCTTGC GTGCTGATCA GCGGCGCGCT GCGCATCGAT
CGACCCGGCT CAGGACCCGA AAACCTTCAG CTCGCCTGGC CGGGCGATCT GGTCGGACTC
GAGGCCCTGC ACGGCTGGTC GCCGACCTGC GATGTGCGGG CACTCGTCGA CAGCGAAATC
GCGCCGCTGC GCCGCATGTC GGACACCGAG TGGCGCGACG TGCTGCTCAA CGCGCTGCTG
CGTCGCCAGT CGCAGGGCGC CAGTCTCGGC AAGGTGCGGG CCGGCAGTGC CAGCGAGCGG
GTGCGACGGC TGCTGCTGAT GCTGGCCGGC GTCGACGAGG GCGCCACGGC GAGCCGGGCC
GGCGACACGC AAGAACCGAT CGTCTGCGAA CTGCCGTCGC TGGCCGACAT GTCGGCCGTC
ACGATGACCG CCTCGGAGAC CGTTTCGCGT GTGGTGTCGA GCCTGCGACG CAGCGGCCTG
CTCGCCGATC ACGGCCATCG CCGCGTGCGC CTGGCCAGCG GCCTGCTGCT CGAAGGCGGC
GAGCTGCCCG TGGGCATGAC GCGCAGCCGC ATCCGCGACT GA
 
Protein sequence
MILMDMPRSS LRAHLNDRHQ PDFPSPPRPM RRDYERGEQV LRAGGSAVPC VLISGALRID 
RPGSGPENLQ LAWPGDLVGL EALHGWSPTC DVRALVDSEI APLRRMSDTE WRDVLLNALL
RRQSQGASLG KVRAGSASER VRRLLLMLAG VDEGATASRA GDTQEPIVCE LPSLADMSAV
TMTASETVSR VVSSLRRSGL LADHGHRRVR LASGLLLEGG ELPVGMTRSR IRD