Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1997 |
Symbol | |
ID | 6162403 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2163565 |
End bp | 2164266 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641664766 |
Product | CRP/FNR family transcriptional regulator |
Protein accession | YP_001791029 |
Protein GI | 171058680 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.000000121238 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATTCTCA TGGACATGCC GCGCAGTTCC CTGCGCGCTC ACCTCAACGA CCGCCACCAG CCGGACTTCC CGTCACCCCC GCGCCCGATG CGCCGAGACT ATGAACGTGG CGAACAGGTC CTGCGCGCCG GCGGCAGCGC GGTGCCTTGC GTGCTGATCA GCGGCGCGCT GCGCATCGAT CGACCCGGCT CAGGACCCGA AAACCTTCAG CTCGCCTGGC CGGGCGATCT GGTCGGACTC GAGGCCCTGC ACGGCTGGTC GCCGACCTGC GATGTGCGGG CACTCGTCGA CAGCGAAATC GCGCCGCTGC GCCGCATGTC GGACACCGAG TGGCGCGACG TGCTGCTCAA CGCGCTGCTG CGTCGCCAGT CGCAGGGCGC CAGTCTCGGC AAGGTGCGGG CCGGCAGTGC CAGCGAGCGG GTGCGACGGC TGCTGCTGAT GCTGGCCGGC GTCGACGAGG GCGCCACGGC GAGCCGGGCC GGCGACACGC AAGAACCGAT CGTCTGCGAA CTGCCGTCGC TGGCCGACAT GTCGGCCGTC ACGATGACCG CCTCGGAGAC CGTTTCGCGT GTGGTGTCGA GCCTGCGACG CAGCGGCCTG CTCGCCGATC ACGGCCATCG CCGCGTGCGC CTGGCCAGCG GCCTGCTGCT CGAAGGCGGC GAGCTGCCCG TGGGCATGAC GCGCAGCCGC ATCCGCGACT GA
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Protein sequence | MILMDMPRSS LRAHLNDRHQ PDFPSPPRPM RRDYERGEQV LRAGGSAVPC VLISGALRID RPGSGPENLQ LAWPGDLVGL EALHGWSPTC DVRALVDSEI APLRRMSDTE WRDVLLNALL RRQSQGASLG KVRAGSASER VRRLLLMLAG VDEGATASRA GDTQEPIVCE LPSLADMSAV TMTASETVSR VVSSLRRSGL LADHGHRRVR LASGLLLEGG ELPVGMTRSR IRD
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