Gene Lcho_1995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1995 
Symbol 
ID6163243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2162359 
End bp2162952 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content67% 
IMG OID641664764 
Productelectron transport protein SCO1/SenC 
Protein accessionYP_001791027 
Protein GI171058678 
COG category[R] General function prediction only 
COG ID[COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.000000392946 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCTGCATC GACGTCGTTT TCAACTGAGC CTGCTGGCTG CCGGCGTGCT GGCGCTGGCC 
GGCTGCAAGG ACGCCCCGCC GCCGTTCAAG AACCTGGACA TCACCGGCTC CGACTACGCC 
CGCAGCTTCG ACCTGCAGGC GCCCGATGGC AGGAACCGCT CGCTGGCCGA TTTCAAGGGC 
CGGCTGGTGA TGGTGTTCTT CGGCTTCACG CAATGCCCGG ACGTCTGTCC GACCGCACTC 
AGCCGCGCCG TTGCGGTGCG GCAGATGCTG GGTGCGGACG CCGAGCGCCT GCAGGTGATC 
TTCATCACCG TCGACCCCGA GCGCGACACC GCCGAACTGC TGTCGCAGTA CATGGCCGCG 
TTCGACCCGA GCTTCCTGGC CCTGCGCGGC GACCTGGTGC GCACGACCGA GGTGGCGCGC 
GAGTTCAAGG TGTTCTTCAA CAAGGTGCCC ACCGGTTCCT CGTACACCAT GGACCACACC 
GCCTTGTCGT ACGTGTTCGA CACCCAGGGC CGCCTGCGCC TGGCGGTGCG GCATTCGCAG 
GGCGCCGAAG ACGTGGCGCA CGACCTGAAG CTGCTGCTGC ACGAATCGAC CTGA
 
Protein sequence
MLHRRRFQLS LLAAGVLALA GCKDAPPPFK NLDITGSDYA RSFDLQAPDG RNRSLADFKG 
RLVMVFFGFT QCPDVCPTAL SRAVAVRQML GADAERLQVI FITVDPERDT AELLSQYMAA 
FDPSFLALRG DLVRTTEVAR EFKVFFNKVP TGSSYTMDHT ALSYVFDTQG RLRLAVRHSQ 
GAEDVAHDLK LLLHEST