Gene Lcho_1991 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1991 
Symbol 
ID6163239 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2159153 
End bp2160109 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content71% 
IMG OID641664760 
Producthistone deacetylase superfamily protein 
Protein accessionYP_001791023 
Protein GI171058674 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00000158404 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGCTCC ACTACAGCGA CCACTTCGTG CTGCCCCTGC CGGCAGGGCA TCGTTTCCCG 
ATGCACAAGT ACCGGTTGCT GCGCGACGCC GTGGCGGCCG AACTGGCCGC GGTCAGGCTG 
GTCCAGGCTG CGGCGGCCAG CGACGGCGAA CTGGCCCTGG TGCACGAACC CGCCTATGTC 
GACGCCGTGC AGCACGGCAG GCTGAGCGCG CAGCAGGAGC GCGAGATCGG TTTTCCGTGG 
TCGCCCGCGA TGGCCGAGCG GGCCCGGCGC TCGGTGGGCG CGACCATCGC CGCCGCACGC 
TGCGCACTGG CCGAAGGCAT CTCGGGCAAC CTGGCCGGCG GCACCCATCA CGCCAGCGCC 
GGCGGCGGCA GCGGCTTCTG CGTCTTCAAC GACGTGGCCG TGGCCGCGCG ACTGATGCAG 
GCCGAGTGGC ACCGTCGGCA TCGACAGTTC CTGCGTATCG CGGTGATCGA CCTCGACGTG 
CACCAGGGCA ACGGCACGGC GTCGATCTTT GCCGACGATC CGATGGTCTA CACGCTGTCG 
ATGCACGGCG AAAAGAACTT CCCGTTCCGC AAGGTGGCCA GCGACCACGA CGTCGATCTG 
CCCGACGGCT GCACCGATGG GCCGTATCTG CAGGCGCTCG ACGCTGCGCT GGAACGGCTC 
TGGCAGCACC ACGCCGAGTC ACCGCCGGGG CTGATCTTCT ACATCGCCGG CGCCGATCCG 
CACGAGGGCG ACCGGCTCGG CCGCCTCAAG ATCAGCGCCG CCGGCCTGGC CGAACGCGAT 
CGGCGCGTGC TGCAGGCCGC CCGCCAACGC GGCGTGCCGG TGGCGATCAG CATGGGCGGC 
GGCTACGGCC GGACGATCGA GGACACCGTG GCGGTGCAGA TGCAGACCTG GCGCGAGGCG 
CTCGCATGCT GGCATCAGTG GCCCCGTCAG ACCCGCGGCG CGCTGGCCGA CGCGTGA
 
Protein sequence
MQLHYSDHFV LPLPAGHRFP MHKYRLLRDA VAAELAAVRL VQAAAASDGE LALVHEPAYV 
DAVQHGRLSA QQEREIGFPW SPAMAERARR SVGATIAAAR CALAEGISGN LAGGTHHASA 
GGGSGFCVFN DVAVAARLMQ AEWHRRHRQF LRIAVIDLDV HQGNGTASIF ADDPMVYTLS 
MHGEKNFPFR KVASDHDVDL PDGCTDGPYL QALDAALERL WQHHAESPPG LIFYIAGADP 
HEGDRLGRLK ISAAGLAERD RRVLQAARQR GVPVAISMGG GYGRTIEDTV AVQMQTWREA 
LACWHQWPRQ TRGALADA