Gene Lcho_1989 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1989 
Symbol 
ID6163286 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2156612 
End bp2157610 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content71% 
IMG OID641664758 
ProductD-isomer specific 2-hydroxyacid dehydrogenase NAD-binding 
Protein accessionYP_001791021 
Protein GI171058672 
COG category[C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.000000514509 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAATCCGT CCGAACAGGG CCGCCCCCGA CTGCTGGTGG CACGCGCCGT CTTCCCAAGC 
GTCATTGCCC GGCTGCGCGA GCACTTCGAC GTGCAGCACA ACGAGGCCGA CGAGGTCTGG 
TCGCGCGCCG AGCTGATCGA GCGCCTGCAG GGCATGGACG CGGTGTTCGT CACCACCGGC 
GAGCCGATCG ACCGCGGCGT GCTGGCCGCC TGCCCGCAGC TCAAGGCGGT GTGCTCGATG 
GCGGTCGGCT ACAACAACAT CGACGTGCCG GCCTGCACCG AACGCGGCGT GCTGGCCAGC 
AACGCGCCCG ACGTGCTGAC CGAGACCACC GCCGACTTCG GCTTCGCGCT GATGATGGCC 
ACCGCGCGCC GCATCACCGA GAGCGAACGC TTCCTGCGCC GCGGCGAGTG GAACAAATGG 
GCGGTCGACA TGTTCGCCGG CCAGGACGTC CACGGCCGCA CGCTGGGCAT CCTCGGCATG 
GGCCGCATCG GCCAGGCCAT CGCCCGGCGC GGTGCGCTCG GTTTCGGCAT GCCGGTGGTC 
TATCACAACC GCTCGCGGCT GGCGCCCGAG CTGGAGCAGC CGCTGGGCGC GCGCTGGCTC 
GGCAAGGAAG ACCTGCTGCG CCAGGCCGAC CACCTGGTGA TCGTGCTGCC GTACAGCGCG 
CAGTCGCACC ACAGCATCGG CGCGGCTGAA CTGGCGCAGA TGAAGCCGAC CGCGACGCTC 
ACCAACGTCG CCCGCGGCGG CATCGTCGAC GACGCCGCGC TGGCGCAGGC GCTCAAGAGC 
GGCGTGATTG CCGCGGCCGG GCTGGATGTC TTCGAGGGCG AGCCCCAGGT GCACCCGGAT 
CTGCTCGACG TGCCCAACGT CGTGCTGACC CCGCACATCG CCAGCGCCAG CCTGCCCACC 
CGCACGGCGA TGGCCAACCT GGCGGCCGAC AACCTGATCG CCTGTTTCAC CGGCGGCACG 
CCGCCCACGG CGCTGAACCC GCAGGTCCTG ACGACCTGA
 
Protein sequence
MNPSEQGRPR LLVARAVFPS VIARLREHFD VQHNEADEVW SRAELIERLQ GMDAVFVTTG 
EPIDRGVLAA CPQLKAVCSM AVGYNNIDVP ACTERGVLAS NAPDVLTETT ADFGFALMMA 
TARRITESER FLRRGEWNKW AVDMFAGQDV HGRTLGILGM GRIGQAIARR GALGFGMPVV 
YHNRSRLAPE LEQPLGARWL GKEDLLRQAD HLVIVLPYSA QSHHSIGAAE LAQMKPTATL 
TNVARGGIVD DAALAQALKS GVIAAAGLDV FEGEPQVHPD LLDVPNVVLT PHIASASLPT 
RTAMANLAAD NLIACFTGGT PPTALNPQVL TT