Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1988 |
Symbol | |
ID | 6163285 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2154357 |
End bp | 2156549 |
Gene Length | 2193 bp |
Protein Length | 730 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641664757 |
Product | isoquinoline 1-oxidoreductase |
Protein accession | YP_001791020 |
Protein GI | 171058671 |
COG category | [C] Energy production and conversion |
COG ID | [COG1529] Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.000000427056 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAACACCC CGATCGAATC GAAGTCGCCG GACCACGTCG CGGCTGAAAC CGGCGACACC GCCGGCCCCG TCACGCTCAA CCGGCGCGGT TTCATGGGTG CCGGCGGCGC GCTGGTGCTC GGTTTCATGT TGCCGGCCAG CGGCCGCCTC GGCGCCGCCA CGCCGACAGG CGCCACGCTC AACGCCTGGC TGCGCATCAC GCCCGACAAC CGCATCACCG TGTTGTGCGG CTCGGCCGAG ATGGGCCAGG GCGTGCACAC CGCCATCCCG ATGCTGCTGG CCGAGGAGCT CGATGCCGAC TGGAAATCGG TGCGCGTCGA GCAGTCGCCG GTCGACAAGG CCTACGCGAA CCCGATGTTC GGCATGCAGG CCACCGGCGG CAGCACCACG GTGCGGGCGC ACTGGACACC CTTGCGCAAG GCCGGCGCCG CAGCGCGCGC GATGCTGGTG GGCGCTGCGG CCACGCAGTG GAAGGTCGAG CCCTCGCAAT GCCGCACCGC GCTCGGTCAG GTGCTCGGGC CGAAGGGGCA GAAACTCAGC TATGGCGCAC TCGCCGTGGC AGCCGCCAAG CTCACCCCGC CGCAAGACCC GCCGCTGAAG GACCGCAAGG ACTTCAAGCT GCTGGGCCAG CCGCTCAAGC GCCTGGACAC CCCGGCCAAG GTCGACGGCA CGGCGAAATA CGGCATCGAC GTCAACCTGC CCGGCATGCT GGTGGCGGTG ATGGCGCGCG CGCCGCAGCC CGGCGCCAAG GTTGCCAAGC TCGACGACAG CGCCGCCAAG GCAGTCAAGG GCGTGCGCCA GGTCATCACC ATCCCGCACG GCGTGGCGGT GCTGGCCGAC GGCTACTGGG CCGCCAGGAA GGGCCGCGAC GCACTCAAGA TCGACTGGGA TCTGGGCACG CTGGCCGATC TGTCGAACGA CAAGATCGAT GCGATGCTGT CCGAAGGCGC CCGCGAAGGT GGCTCGGTGG CACGCGAGGC CGGCAACATC AAGGACGCCA ATGCGACGTC GGCCAAGACG CTCGATGCCC GCTACAGCGC GCCCTACCTG GCGCATGCCT GCATGGAGCC GATGAACTGC ACCGCCTGGG TGCGTGGCGA CGAGGTCGAG ATCTGGGCCG GCACCCAGAG CCAAGGCCCG GCGCAGGGCA TCCTGAGCCA GGTGGCGCAG GTCACGCCGG CCAAGGTGAC GGTCCACACG ATGATGCTGG GCGGCGGTTT CGGCCGGCGC TTCGCGCCCG ACTTCACGAT CGACGCCACG CTGCTGTCCA AGCTCAGCGG CAAGCCCGTC AAGCTGATCT ACAGCCGCGA GGACGACATG ATGGCCGGCT TCTACCGGCC GGCGTCGGTG GCGATGTTCA GCGGCGCGCT CGACGACCAG GGCGCCCTCA CCGGCCTCGC AGCCAGCGTG AGCTCGCCGT CCATCATGGC GGCCTCGGGC TTCATGAAGA TCCCCGACAA CGGCGTCGAC AACTTCGCGA TGGAAGGCAT CGCCGACATG CCCTACGACA TCGAGAACCT CAAGCTCGAA TACGGCCGCC GCGAGCCGGG GCCGCAGGTC TGGTTCTGGC GCTCGGTCGG GCACTCGCAG AACATCTTCT TCATGGAAGG TTTCATCGAC GAGCTGGCGG TGGCGGCGGG CAAGGATCCG TACGAGTTCC GCCGCAACCT GCTGGGCAAG CAGCCGCGCT ACAAGGGCGT GCTCGAAGCC GCGGCGCAGA AGGCCGGCTG GGGCCAGCCG CTGCCGGCGG GCGTGTTCCG CGGCATCGCG GTGGGCATGA GTTTCGGCAG CTACGTGGCC GAGGTTGCCG AGGTGTCGGT GGCCGCCGAC GGCACGCCCA AGGTGCACCG GGTGGTGGCC GCGGTCGACT GCGGCATGAC GGTGAACCCG GAGATCATCC GCCGCCAGAC CGAGAGCGGC ATCGTCTTCG GGCTGTCGGC GGCGCTCTAC GGCAAGCTCG ATTTCAAGGA CGGCCGCCTG CAGCAGAGCA ACTTCCACGA CTACCCGGTG CTGCGCATGA ACGAGGCGCC GAAGGTCGAG GTGCACATCC TGCCCAGCAC CGAAGCGCCC GGCGGCATCG GCGAGCCCGG CACGCCGCCG CTGGCGCCGG CAGTGGTGAA CGCGCTGTTC GCCGCCACCG GCCAGCGGCT GCGGCAGTTG CCGATCGACA GCAGCAAGCT CAAGCGGGCC TGA
|
Protein sequence | MNTPIESKSP DHVAAETGDT AGPVTLNRRG FMGAGGALVL GFMLPASGRL GAATPTGATL NAWLRITPDN RITVLCGSAE MGQGVHTAIP MLLAEELDAD WKSVRVEQSP VDKAYANPMF GMQATGGSTT VRAHWTPLRK AGAAARAMLV GAAATQWKVE PSQCRTALGQ VLGPKGQKLS YGALAVAAAK LTPPQDPPLK DRKDFKLLGQ PLKRLDTPAK VDGTAKYGID VNLPGMLVAV MARAPQPGAK VAKLDDSAAK AVKGVRQVIT IPHGVAVLAD GYWAARKGRD ALKIDWDLGT LADLSNDKID AMLSEGAREG GSVAREAGNI KDANATSAKT LDARYSAPYL AHACMEPMNC TAWVRGDEVE IWAGTQSQGP AQGILSQVAQ VTPAKVTVHT MMLGGGFGRR FAPDFTIDAT LLSKLSGKPV KLIYSREDDM MAGFYRPASV AMFSGALDDQ GALTGLAASV SSPSIMAASG FMKIPDNGVD NFAMEGIADM PYDIENLKLE YGRREPGPQV WFWRSVGHSQ NIFFMEGFID ELAVAAGKDP YEFRRNLLGK QPRYKGVLEA AAQKAGWGQP LPAGVFRGIA VGMSFGSYVA EVAEVSVAAD GTPKVHRVVA AVDCGMTVNP EIIRRQTESG IVFGLSAALY GKLDFKDGRL QQSNFHDYPV LRMNEAPKVE VHILPSTEAP GGIGEPGTPP LAPAVVNALF AATGQRLRQL PIDSSKLKRA
|
| |