Gene Lcho_1988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1988 
Symbol 
ID6163285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2154357 
End bp2156549 
Gene Length2193 bp 
Protein Length730 aa 
Translation table11 
GC content70% 
IMG OID641664757 
Productisoquinoline 1-oxidoreductase 
Protein accessionYP_001791020 
Protein GI171058671 
COG category[C] Energy production and conversion 
COG ID[COG1529] Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.000000427056 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAACACCC CGATCGAATC GAAGTCGCCG GACCACGTCG CGGCTGAAAC CGGCGACACC 
GCCGGCCCCG TCACGCTCAA CCGGCGCGGT TTCATGGGTG CCGGCGGCGC GCTGGTGCTC
GGTTTCATGT TGCCGGCCAG CGGCCGCCTC GGCGCCGCCA CGCCGACAGG CGCCACGCTC
AACGCCTGGC TGCGCATCAC GCCCGACAAC CGCATCACCG TGTTGTGCGG CTCGGCCGAG
ATGGGCCAGG GCGTGCACAC CGCCATCCCG ATGCTGCTGG CCGAGGAGCT CGATGCCGAC
TGGAAATCGG TGCGCGTCGA GCAGTCGCCG GTCGACAAGG CCTACGCGAA CCCGATGTTC
GGCATGCAGG CCACCGGCGG CAGCACCACG GTGCGGGCGC ACTGGACACC CTTGCGCAAG
GCCGGCGCCG CAGCGCGCGC GATGCTGGTG GGCGCTGCGG CCACGCAGTG GAAGGTCGAG
CCCTCGCAAT GCCGCACCGC GCTCGGTCAG GTGCTCGGGC CGAAGGGGCA GAAACTCAGC
TATGGCGCAC TCGCCGTGGC AGCCGCCAAG CTCACCCCGC CGCAAGACCC GCCGCTGAAG
GACCGCAAGG ACTTCAAGCT GCTGGGCCAG CCGCTCAAGC GCCTGGACAC CCCGGCCAAG
GTCGACGGCA CGGCGAAATA CGGCATCGAC GTCAACCTGC CCGGCATGCT GGTGGCGGTG
ATGGCGCGCG CGCCGCAGCC CGGCGCCAAG GTTGCCAAGC TCGACGACAG CGCCGCCAAG
GCAGTCAAGG GCGTGCGCCA GGTCATCACC ATCCCGCACG GCGTGGCGGT GCTGGCCGAC
GGCTACTGGG CCGCCAGGAA GGGCCGCGAC GCACTCAAGA TCGACTGGGA TCTGGGCACG
CTGGCCGATC TGTCGAACGA CAAGATCGAT GCGATGCTGT CCGAAGGCGC CCGCGAAGGT
GGCTCGGTGG CACGCGAGGC CGGCAACATC AAGGACGCCA ATGCGACGTC GGCCAAGACG
CTCGATGCCC GCTACAGCGC GCCCTACCTG GCGCATGCCT GCATGGAGCC GATGAACTGC
ACCGCCTGGG TGCGTGGCGA CGAGGTCGAG ATCTGGGCCG GCACCCAGAG CCAAGGCCCG
GCGCAGGGCA TCCTGAGCCA GGTGGCGCAG GTCACGCCGG CCAAGGTGAC GGTCCACACG
ATGATGCTGG GCGGCGGTTT CGGCCGGCGC TTCGCGCCCG ACTTCACGAT CGACGCCACG
CTGCTGTCCA AGCTCAGCGG CAAGCCCGTC AAGCTGATCT ACAGCCGCGA GGACGACATG
ATGGCCGGCT TCTACCGGCC GGCGTCGGTG GCGATGTTCA GCGGCGCGCT CGACGACCAG
GGCGCCCTCA CCGGCCTCGC AGCCAGCGTG AGCTCGCCGT CCATCATGGC GGCCTCGGGC
TTCATGAAGA TCCCCGACAA CGGCGTCGAC AACTTCGCGA TGGAAGGCAT CGCCGACATG
CCCTACGACA TCGAGAACCT CAAGCTCGAA TACGGCCGCC GCGAGCCGGG GCCGCAGGTC
TGGTTCTGGC GCTCGGTCGG GCACTCGCAG AACATCTTCT TCATGGAAGG TTTCATCGAC
GAGCTGGCGG TGGCGGCGGG CAAGGATCCG TACGAGTTCC GCCGCAACCT GCTGGGCAAG
CAGCCGCGCT ACAAGGGCGT GCTCGAAGCC GCGGCGCAGA AGGCCGGCTG GGGCCAGCCG
CTGCCGGCGG GCGTGTTCCG CGGCATCGCG GTGGGCATGA GTTTCGGCAG CTACGTGGCC
GAGGTTGCCG AGGTGTCGGT GGCCGCCGAC GGCACGCCCA AGGTGCACCG GGTGGTGGCC
GCGGTCGACT GCGGCATGAC GGTGAACCCG GAGATCATCC GCCGCCAGAC CGAGAGCGGC
ATCGTCTTCG GGCTGTCGGC GGCGCTCTAC GGCAAGCTCG ATTTCAAGGA CGGCCGCCTG
CAGCAGAGCA ACTTCCACGA CTACCCGGTG CTGCGCATGA ACGAGGCGCC GAAGGTCGAG
GTGCACATCC TGCCCAGCAC CGAAGCGCCC GGCGGCATCG GCGAGCCCGG CACGCCGCCG
CTGGCGCCGG CAGTGGTGAA CGCGCTGTTC GCCGCCACCG GCCAGCGGCT GCGGCAGTTG
CCGATCGACA GCAGCAAGCT CAAGCGGGCC TGA
 
Protein sequence
MNTPIESKSP DHVAAETGDT AGPVTLNRRG FMGAGGALVL GFMLPASGRL GAATPTGATL 
NAWLRITPDN RITVLCGSAE MGQGVHTAIP MLLAEELDAD WKSVRVEQSP VDKAYANPMF
GMQATGGSTT VRAHWTPLRK AGAAARAMLV GAAATQWKVE PSQCRTALGQ VLGPKGQKLS
YGALAVAAAK LTPPQDPPLK DRKDFKLLGQ PLKRLDTPAK VDGTAKYGID VNLPGMLVAV
MARAPQPGAK VAKLDDSAAK AVKGVRQVIT IPHGVAVLAD GYWAARKGRD ALKIDWDLGT
LADLSNDKID AMLSEGAREG GSVAREAGNI KDANATSAKT LDARYSAPYL AHACMEPMNC
TAWVRGDEVE IWAGTQSQGP AQGILSQVAQ VTPAKVTVHT MMLGGGFGRR FAPDFTIDAT
LLSKLSGKPV KLIYSREDDM MAGFYRPASV AMFSGALDDQ GALTGLAASV SSPSIMAASG
FMKIPDNGVD NFAMEGIADM PYDIENLKLE YGRREPGPQV WFWRSVGHSQ NIFFMEGFID
ELAVAAGKDP YEFRRNLLGK QPRYKGVLEA AAQKAGWGQP LPAGVFRGIA VGMSFGSYVA
EVAEVSVAAD GTPKVHRVVA AVDCGMTVNP EIIRRQTESG IVFGLSAALY GKLDFKDGRL
QQSNFHDYPV LRMNEAPKVE VHILPSTEAP GGIGEPGTPP LAPAVVNALF AATGQRLRQL
PIDSSKLKRA