| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1973 |
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| Symbol | |
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| ID | 6160736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2140306 |
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| End bp | 2142042 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664742 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001791005 |
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| Protein GI | 171058656 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.203467 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAT CCGCACGCGC CGGTCTGGCA CTCACCGCCG TCGCCTTGGC CAGCTGGCTG
GCCGGTTGCG CGACCGCCCC GCAGGCCTCG CTGTCCAACA CCAGCGAGAT CCCGCCGCCG
CCGCTGCTGA CCACCGTCTC GACCCGCACC CAGCGCCCGC AAGAAGGCCC GCTCGCGCCG
CTGCCGTCGC TGGACGGCCA GAACGCGCCG GTCGCCAGCG CCGCCGCACC CGGGGCCGGC
GACGTCGCCA CCAGCCCGCA ACCGGCCGCG ACCCGCACGC TCAACCCGAC CGGCACGGCC
CATGCCGACG ACGGCGGCGC CACGGTCGAC GTCCGGCCGC TGGCCCGCTC CGAGATCCTC
AGCGCCGCCC TGCCCCCGGC CGAGCCCGAA AACGGCATCG ATGCAGCCGG CCGACCGACC
GACATCCTGC GTCCCGATCA GACGCCGATC GACGACTCGC AGGCCCGCCT CGACCTCTGG
CAGCGCGTGC GCGACAGCTA CCGCATGCCC GATCTCGACG GCGCGCTGGT CGAGCAGCAC
GAGCGCTGGT ACGCCGCCCG CCCCGAATAC GTGCAGCGCA TGACCGAGCG CGGCGGCCGC
TACCTGTTCC ACATCCTCGA CGAAGTCCAG CGTCGCGGCA TGCCCGGCGA GCTGGCGCTG
CTGCCGTTCA TCGAAAGCGC CTTCAACCCG CAGGCGATGT CGGTCGCCAA GGCGTCGGGC
ATGTGGCAGT TCATCCCGTC GACCGGGCGC GATTTCGACC TCAAGCAGAA CCATTTCCGC
GACGACCGCC GCGACGTGCT GGCCTCGACC CGCGCCGCGC TCGACTACCT GGCGCGCCTG
CATCGTCAGT TCGGCGACTG GCACCTCGCG CTGGCCGCCT ACAACTGGGG TGAAGGCAAC
GTCAGCCGGG CCATCGCGCG CAACCAGCGC CTGGGCCTGG CCACCGGCTA CGAGAGCCTG
CGCATGCCGG CCGAGACGCG CAGCTACGTG CCCAAGCTGC AGGCGGTCAA GAACATCGTC
GCCAACCCGC GCGCCTTCGG CCTGACGCTG CCGGCGCTCG AGAACCACCC GTATTTCATG
AGCGTGGCGA TCAAGCGCGA CATCGACGTG GCGCTGGCCG CGCGGCTGGC CGGTCTCGGC
GTCGACGAGT TCAAGGCGCT CAACCCGTCG ATGAACAAGC CCGTCATCCT GGCCGCAGGC
ACGCCGCAGG TGCTGCTGCC CTACGACAAC GCCGATGCGT TCGTGCGCCG CCTCGAGGCC
CATCAAGGCC CGCTCGCCAG CTGGACCGCC TGGGTCGTGC CGCGCACCAT GCGCCCGGCC
GATGCGGCCA GGCAGGTCGG CGTGAGCGAG TCGGTGCTGC GCGAGGTCAA CCACATCCCG
CCGCGCATGC TGGTCAAGGC CAGTTCGACC CTGCTGGTGC CGCGCTCGCT GCGGCGCAGC
GTCGACGTCT CCGAGCAGGT CGCCGACAAC GCCTACATGA GCCTGGCGCC GGATCTGCCG
CCGATGAAGA AGGTGGCGAT CAAGGCGCGC AAGGGCGACA CGGTGGCCAG CGTGGCCAAG
CGCCATCGCA TCAGCGCGGC GCAACTGGCG CAATGGAACA AGGTGTCGAC CAGCGCGCGC
TTTGCCGCCG GCCAGTCGCT GGTGATCTAC AAGGCGAACA AGCCGGCCAA GGCCACCAAG
GTGCGCCGTG CCCAGGCGCC GGCCAAGGCG GTCAGGGTGG CGAGCAGCCG TCCGTGA
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| Protein sequence | MKSSARAGLA LTAVALASWL AGCATAPQAS LSNTSEIPPP PLLTTVSTRT QRPQEGPLAP
LPSLDGQNAP VASAAAPGAG DVATSPQPAA TRTLNPTGTA HADDGGATVD VRPLARSEIL
SAALPPAEPE NGIDAAGRPT DILRPDQTPI DDSQARLDLW QRVRDSYRMP DLDGALVEQH
ERWYAARPEY VQRMTERGGR YLFHILDEVQ RRGMPGELAL LPFIESAFNP QAMSVAKASG
MWQFIPSTGR DFDLKQNHFR DDRRDVLAST RAALDYLARL HRQFGDWHLA LAAYNWGEGN
VSRAIARNQR LGLATGYESL RMPAETRSYV PKLQAVKNIV ANPRAFGLTL PALENHPYFM
SVAIKRDIDV ALAARLAGLG VDEFKALNPS MNKPVILAAG TPQVLLPYDN ADAFVRRLEA
HQGPLASWTA WVVPRTMRPA DAARQVGVSE SVLREVNHIP PRMLVKASST LLVPRSLRRS
VDVSEQVADN AYMSLAPDLP PMKKVAIKAR KGDTVASVAK RHRISAAQLA QWNKVSTSAR
FAAGQSLVIY KANKPAKATK VRRAQAPAKA VRVASSRP
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