| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1969 |
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| Symbol | |
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| ID | 6164107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2136794 |
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| End bp | 2138050 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641664738 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001791001 |
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| Protein GI | 171058652 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.728278 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGATCA CACAAAAACT GGTGGCCCTC GTGGGCCTGG TGGCCCTCGC CGGTGCGGCC
TATTGGGTGC AGAACCGACC CGCCGGCACG AGTCCCGTCG CCGGCGAGGC AGCGGCGGGT
GGGCCGGTGG CCGGCGCGGG TTCTGGCGCG GCCAAGGGGG CTCAGGGCCG ATCCGGCAAC
GCGGGCGGGC CGGCACCGGT CGAGGTCGGC CAGGTGGTGT TGCGCCGGCT CGACGACGAT
GTGCACGCGG TCGGCAGCCT GCGCTCCAAC CAGGGCGTGA TGATGCGGCC CGAGGTGGCC
GGCCGGATCA TGAAGATCGG CTTCCAGGAC GGCCAGCGGG TGCGCCGCGG CCAACTGCTG
ATCCAGCTCG ACGACACCCT GCAGCAGGCC CAGTTGCAGC AGGCGCGGGC CCAGGCCGGC
ATCGCCAACA CCAATCTGCA GCGCAGCCAG GAGCTGGCAG CTGAAAAGTT CGTGAGCCAG
AGTGCCGTCG ATCAGGCGGC CGCCAACGTC GCCGTGGCCG ATGCGCAAGT CCGGCTGGTC
GAGGCGCAGC TGGCGCGCAT GCGCGTGCTT GCACCGTTCG ACGCGATGGC CGGCATCCGG
CTGATCAACG TCGGCGATTT CGTCAAGGAT GGCGCCGACC TCATCAACCT CGAAGACACC
AGCAGCATGT GGCTCGATTA CCGCCTGCCC GAGCGGGTGC TGGGCCGGCT GCGGCGCGGC
GCGGTCATCG AGGCCGAGAT GGACGCCTTT CCGGGTCAGC AGTTCAAGGG CCAGGTCGAA
GCCATCGATG CCCAGGTCGA TGCCAACGGC CGGGCCCTGC TGGTGCGCGC GCGGGTCAAC
AACCCGGGCG ACCGGCTCAA GTCGGGCATG TTCGCGCGGG TGCGCACGGT GATGGGCGTG
CGCGAAAACG CCTTGCTGGT GCCCGAGGAG GCCCTGGTGC CGCTGGGCAA CAAGCAATAT
GTCTTCAAGG TGGTGGCAGG TGAGAAGGGC CAGGTGGCGC AGCGCGAGGA AGTGACGGTG
GGCCTGCGCC TACCCGGGCT GGCCGAAGTC ACCGGCGCGG TCAAGGCCGG CGATGTGGTC
GTCACGGCCG GCCAGGCCCG GCTGGGGCGC GACGCGACGC CGGTGCCGGT GCGGGTGATC
GATCTGGCCC GCACGGCGTC GAGCGGTTCC GGTGCGGCTG CAGGCGCGGT CGCCGCGTCG
GCGCCGGGCC GCGCGGCCAG CGGGCTGACG ATGGGTGACG CCGCCTCGTC GCCCTGA
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| Protein sequence | MKITQKLVAL VGLVALAGAA YWVQNRPAGT SPVAGEAAAG GPVAGAGSGA AKGAQGRSGN
AGGPAPVEVG QVVLRRLDDD VHAVGSLRSN QGVMMRPEVA GRIMKIGFQD GQRVRRGQLL
IQLDDTLQQA QLQQARAQAG IANTNLQRSQ ELAAEKFVSQ SAVDQAAANV AVADAQVRLV
EAQLARMRVL APFDAMAGIR LINVGDFVKD GADLINLEDT SSMWLDYRLP ERVLGRLRRG
AVIEAEMDAF PGQQFKGQVE AIDAQVDANG RALLVRARVN NPGDRLKSGM FARVRTVMGV
RENALLVPEE ALVPLGNKQY VFKVVAGEKG QVAQREEVTV GLRLPGLAEV TGAVKAGDVV
VTAGQARLGR DATPVPVRVI DLARTASSGS GAAAGAVAAS APGRAASGLT MGDAASSP
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