| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1968 |
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| Symbol | |
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| ID | 6164106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2133700 |
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| End bp | 2136777 |
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| Gene Length | 3078 bp |
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| Protein Length | 1025 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641664737 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_001791000 |
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| Protein GI | 171058651 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium)
[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.904496 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACTGT CCGAAGTTTC GATCCGCCGC CCGGTGTTCG CCACCGTGAT GTCGCTGCTG
CTGGTGCTGG TCGGGCTGGT GTCCTACACC CGGCTGCAGG TGCGCGAGTA CCCGCGCATC
GACGAGCCGG TGGTGACGGT GCGCACCAAG CTGATCGGCG CCTCGGCCGA GGTGATCGAG
TCGCAGGTCA GCAAGCCGCT CGAGGACTCG ATCGCCGGCA TCGACGGCGT CGACATCATC
ACCTCGATCT CGCGCTCCGA GCAGAGCCAG ATCACGGTGC GCTTCAAGCT CGAGAAAGAC
CCCGACAACG CCGCCGCCGA CGTGCGCGAC CGCGTCTCGC GGGTGCGCGG CCGGCTGCCC
GATGCGATCG ACGAGCCGGT GATCGCCAAG GTCGAGGCCG ACGCCACGCC CACCATCTGG
CTGGCCTTCA GCAGCGAGAC GATCACGCCG CTGGCCATCA CCGACATCAT CAACCGCGTC
GTCAAGCCGC GCCTGCAGAC CGTGCCCGGT GTGGCCGACG TGCAGATCAA CGGCGACCGC
ACCTACGCGA TGCGGATCTG GCTCGACGCC GACAAGCTCG CCTCCTACCG CCTGACGGTG
CAGGACGTCG AGGACGCACT GCGGCGCCAG AACCTCGAGG TGCCGGCCGG GCGCATCGAG
AGCCGGCAGC GCGAGTTCAA CGTCACCTCG CGCACCGACC TCAACACCGA GGCGCAGTTC
GGCGATGTCG CGCTCAAGGT GGTCAGCGGC TACTCGGTGC GGCTGCGCGA CGTGGCGCGC
ATCGAACAGG CGCCGGCCAG CGAGCGCTCG ATCGTGCGAC TGAACGGCAC GCCGGCGATC
TCGACCGGCG TGATCCGCCA GGCCACGGCC AACCCGCTGG AAGTCTCGGC CGCCGTGCGC
GCCGTGCTGC CCAAGATCCA GGACGACCTG CCGCCGGGCC TGCAGGTGAC GGTGGCCAAC
GACAACTCGA TCTTCATCGA CCGCTCCGTC AAGTCGGTCT ACACCACCAT CACCGAGGCG
GTGGTGCTGG TGGCGCTGGT GGTGTTCGTG TTCCTGCGCC ACCTGCGCGC GGCGGTGATC
CCGCTGGTGA CGATCCCCGT CAGCCTGATC GGCGCCTTCA CGCTGATGTC GGTGGCCGGA
TTCACCGTCA ACACCCTCAC GCTGCTGGCG CTGGTGCTGG CGATCGGCCT GGTGGTCGAC
GACGCCATCG TCGTGCTGGA AAACATCTTC CGCCACATCG AGGAGGGCCT CGAACCGTTC
CAGGCCGCGC TCAAGGGCGC GAAGGAAATC GGCTTCGCGG TGGTCGCGAT GACGCTGACG
CTGGCGGCGG TCTACGCGCC GCTGGCCTTC ACGCCGGGGC GCACCGGGCG GCTGTTTGCC
GAATTCGCCT TGACGCTGGC CGGTGCGGTG GTGGTGTCGG GTTTTGTCGC GCTGACGCTC
ACGCCGATGA TGTGCAGCCT GCTGCTGCGC CACAACGCCA AGCCGAACCG CTTCGACCGC
GTCATGGAGG CCGGGCTCGA CCGCCTGACC GCCGGCTACA CCTGGGTGTT GCGCGGCCTG
CTCGGCCAGC GCTGGATCGT GCTGGTGGTG ATGGCGGCGT CGGGGGCGGG CAGCTGGTGG
CTGTTCAGCC ACGCCAAGAG CGAACTTGCG CCGCTCGAGG ACCGCGGCGT CATCATCACC
ACCATCAACT CGCCCGACGG CGCCACGCTC GACTACACCG CCCGCTACGC GCGTGCGATC
GAGGGCATCG CTGCCGACTT CCCCGAGCTG GATCGCAAGT TCGTCATCAC CGGCAACCCG
ACGGTGGCGC AGGCCACGGC CATCCTGCGG GCGGTCGACT GGACCGAACG CAGCCGCACC
ACCGCCGAGA TCGCACGCGC GATGCAGCCG CAGTTCGCCA GCCTGCCGGG CGTGTCGGCG
TTCCCGGTCA CGCCGCCGAG CCTGGGGCAG GGCTTTCGCG AGCGGGCGAT CAACTTCGTG
ATCCTGACCA ACGACAGCTA CGCCAACCTG GCGCGCATCA ACCAGCAGAT GCTGGCCGAG
ATCGCCAAGA ACCCCGGCAT CGTGCAGCCC GACAGCGACC TGCGGCTCAA CAAGCCGGAG
ATCCTGCTCG AGGTCGACCG CGACCGCGCG GCCGACGCCG GCGTGGCCAT CGACCAGGTG
GCGCGCACGG TCGAGACCAT GCTCGGCGGC CGCGCCGTGA CACGCTACAA GCGCGACGCC
GACCAGTACG ACGTGCTGGT GCAGACGCAG GCCAGCGGCC GCACCACACC CGACGACATC
GACCGCCTGT TCGTGCGCGG GCGCAACGAC ACGATGGTGC CGCTGTCGTC GATCGTGAAG
GTACGCGAGT CGGTCAGCCC GCGCGAGCTC AACCACTTCA ACCAACGCCG CTCGCTGGCC
ATCACGGCCA ATCTGGCGCC GGGTTATTCG CTCGGCGAGG CGCTGCAGTT CATGGATGCC
ACGGCCGCCA AGGTGCTGCC GGTCGGCTAC GCCACCGAGC TCAACGGCAT CAGCCGCGAG
TTCCGCTCGT CGAGCGGCGC GCTGGGGCTG GTGTTCGTGC TGGCGCTGCT GTTCATCTTC
CTGGTGCTGG CGGCGCAGTT CGAGAGCTTC GTCGACCCCT TCATCATCAT GCTGGCGGTG
CCGCTGTCGA TGGTGGGCGC GCTCGCCGCG CTGCAGTGGA GCGGCGGCAC GCTCAACGTC
TACTCGCAGA TCGGCCTGAT CACGCTGGTC GGGCTGATCA CCAAGCACGG CATCCTGATC
GTCGAGTTCA GCAACCAGCT GCGCCAGCAG GGCAAGTCGG TGATGGACGC CACGCTCGAA
GCCGCCAGCC TGCGACTGCG GCCGATCCTG ATGACCACCG GCGCGATGGT GCTCGGCGCC
TTGCCGCTGG CCCTGGCCGA AGGCGCCGGC GCCGAGAGCC GCCAGCAGAT CGGCTGGGTG
ATCGTCGGCG GCATGAGCCT GGGCACGCTG CTGACGATCT TCGTCGTGCC GACGATCTAC
ACGCTGATGG CGCGCAAGCA GGTGCCCGGC GAGATCACCA CGCCGGCGAA CGAGGAGGCG
CCGGCTGCGG CGCATTGA
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| Protein sequence | MRLSEVSIRR PVFATVMSLL LVLVGLVSYT RLQVREYPRI DEPVVTVRTK LIGASAEVIE
SQVSKPLEDS IAGIDGVDII TSISRSEQSQ ITVRFKLEKD PDNAAADVRD RVSRVRGRLP
DAIDEPVIAK VEADATPTIW LAFSSETITP LAITDIINRV VKPRLQTVPG VADVQINGDR
TYAMRIWLDA DKLASYRLTV QDVEDALRRQ NLEVPAGRIE SRQREFNVTS RTDLNTEAQF
GDVALKVVSG YSVRLRDVAR IEQAPASERS IVRLNGTPAI STGVIRQATA NPLEVSAAVR
AVLPKIQDDL PPGLQVTVAN DNSIFIDRSV KSVYTTITEA VVLVALVVFV FLRHLRAAVI
PLVTIPVSLI GAFTLMSVAG FTVNTLTLLA LVLAIGLVVD DAIVVLENIF RHIEEGLEPF
QAALKGAKEI GFAVVAMTLT LAAVYAPLAF TPGRTGRLFA EFALTLAGAV VVSGFVALTL
TPMMCSLLLR HNAKPNRFDR VMEAGLDRLT AGYTWVLRGL LGQRWIVLVV MAASGAGSWW
LFSHAKSELA PLEDRGVIIT TINSPDGATL DYTARYARAI EGIAADFPEL DRKFVITGNP
TVAQATAILR AVDWTERSRT TAEIARAMQP QFASLPGVSA FPVTPPSLGQ GFRERAINFV
ILTNDSYANL ARINQQMLAE IAKNPGIVQP DSDLRLNKPE ILLEVDRDRA ADAGVAIDQV
ARTVETMLGG RAVTRYKRDA DQYDVLVQTQ ASGRTTPDDI DRLFVRGRND TMVPLSSIVK
VRESVSPREL NHFNQRRSLA ITANLAPGYS LGEALQFMDA TAAKVLPVGY ATELNGISRE
FRSSSGALGL VFVLALLFIF LVLAAQFESF VDPFIIMLAV PLSMVGALAA LQWSGGTLNV
YSQIGLITLV GLITKHGILI VEFSNQLRQQ GKSVMDATLE AASLRLRPIL MTTGAMVLGA
LPLALAEGAG AESRQQIGWV IVGGMSLGTL LTIFVVPTIY TLMARKQVPG EITTPANEEA
PAAAH
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