Gene Lcho_1961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1961 
Symbol 
ID6163828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2126197 
End bp2127084 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content65% 
IMG OID641664730 
Productintegrase catalytic region 
Protein accessionYP_001790993 
Protein GI171058644 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTACC AGTTCGTCGA GCAACTGCAC AAGAAGGCCG TCACCATCGA GCGTCTATGC 
CGCGTGCTGG GCGTCAGCCG TTCGGGCTAC TACGGTGCCC GTCAGCGCGC CAAGCTCGCG
CCTAAGGCCT GCTTGGTCAG CACGCAATTG AAGGCCGAGT TCGCCGCCAG CGGCCGCGTC
TATGGCAGCC GTCGCCTGTG CGCAGTGCTG CGCGCTCGGG GGCTGGGCAT CGGGCGCCAC
CGGGTGCGAC GTTTGATGCG CGAGAACAGG TTGCGGGCCC TGTGGCGACG CAAGTTCATG
CACACCACCG ACAGCGGTCA TGCGCTGCCC GTCTCTGACA ACCTGCTGGC ACGGCGCTTC
AATCCGAGCC GCCCCAACCA GGCCTGGGTG AGCGACATCA CCTACATCCG CACGCGCAGC
GGCTGGCTGT ACCTGGCCGT GGTGCTGGAC CTGTACGCCC GCAAGGTCGT GGGCTGGGCG
ATGGCGCCGA CGATGCATGC CGAGTTGGTG TGCGCAGCGC TGCAACTGGC CATTGCGCAG
CGCCAACCCG CGCCAGGGCT GATTGTTCAT TCCGACCGAG GCAGCCAGTA CGCCAGCGCG
TTGCATCAGG CGCTGCTGGC GCGCCACGGC CTGGTCGGCA GCATGAGCCG CAAGGGCAAC
TGCTGGGACA ACGCGGTGAT GGAACGCTTC TTCCTGAGCC TCAAGACCGA GCGGGTCTGG
CAGCGCGACT ACGCCAACCA TGCCGAGGCC ATGACCGACA TCGCCGACTA CATCGTGGGC
TTCTACAACA GCGTGCGGCT GCACTCCAAA CTGGGCAACC TGCCACCCAA TGCCTTCGAG
CAGCAATCGG CAATCAAACA ACCTATCGCG GTGTCCGAAA AAACTTGA
 
Protein sequence
MSYQFVEQLH KKAVTIERLC RVLGVSRSGY YGARQRAKLA PKACLVSTQL KAEFAASGRV 
YGSRRLCAVL RARGLGIGRH RVRRLMRENR LRALWRRKFM HTTDSGHALP VSDNLLARRF
NPSRPNQAWV SDITYIRTRS GWLYLAVVLD LYARKVVGWA MAPTMHAELV CAALQLAIAQ
RQPAPGLIVH SDRGSQYASA LHQALLARHG LVGSMSRKGN CWDNAVMERF FLSLKTERVW
QRDYANHAEA MTDIADYIVG FYNSVRLHSK LGNLPPNAFE QQSAIKQPIA VSEKT