| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1946 |
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| Symbol | |
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| ID | 6161352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2110044 |
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| End bp | 2111525 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641664715 |
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| Product | ribonuclease |
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| Protein accession | YP_001790978 |
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| Protein GI | 171058629 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.737696 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGACA TCCTGGTGAA CTGGGCCCCG CAGGAAACGC GGGTGGCCAT CGTCGAAAAC
GGCGCGGTGC AGGAGCTGCA TGTCGAACGC ACGCTCGAAC GCGGACTGGT CGGCAACGTC
TACCTCGGCA AGGTGGCGCG GGTGCTGCCC GGCATGCAGA GCGCGTTCAT CGACATCGGC
CTGGAGCGCG CAGCCTTCCT GCACGTGGCC GACGTGCACG TGGCCGGGCA ATCGATCGGG
CGCAACTCGC ACGGCGACAG CGCCGTGCCA CCGATCGAGA AGCTGGTCTA CGAAGGCCAG
AGCCTGGTAG TGCAGGTCAT CAAGGACCCG ATCGGCACCA AGGGCGCCCG GCTGTCGACC
CAGATCAGCG TGGCCGGGCG GCTGCTGGTC TACCTGCCGC AGGACGAACA CATCGGCATC
TCGCAGAAGA TCGGCTCGCA CGAGCTGCGC GAGCAGCTGC GCCAGCGCAT GGCCGTGCTG
GTGGGCACGC GCGACAGCGG CGGCGGCGGT GGCTTCATCC TGCGCACCAA CGCCGAGGAC
GCGACCGACG CCGAACTGGC CGAGGACATC GCCTACCTGC GCAAGGCCTG GGCGACGATG
CGCGCACTGG CGCTCAAGAG CGCGGCGGGC ACGCTGCTGC ACGAAGACCT GAACCTGGCG
CAGCGTGTGC TGCGCGACCT GGTCAACGAG AACACCCAGT CGATCCGCAT CGACTCGCGC
ACGCAGTTCG AAGCCTTGCG CGAGTTCGGC CAGCAGTTCA TGCCCAGCGC GGTCGGGCGG
CTGCAGCACT ACAAGGGCGA GCGGCCGATC TTCGACCTGT TCAGCATCGA CCAGGAGATC
GAGCGCGCCC TGGCGCGGCG GGTCGACCTG AAGTCGGGCG GCTACCTGGT GGTCGACCAG
ACCGAGGCGC TGACCACGAT CGACGTCAAC ACCGGCGGTT TCGTCGGTGC GCGCAACTTC
GACGACACGA TCTTCAAGAC CAACCTCGAG GCCGGCCAGG CCATCGCCCG CCAGCTGCGG
CTGCGCAACC TGGGCGGCAT CATCATCATC GACTTCATCG ACATGACGCG CCCCGAGCAC
CAGGAACAGG TGCTGGCCGA ACTGCGCAAG CAGCTCGCGC GCGACCGCAC CAAGACCACC
ATCAGCGGCT TCACGCAGCT CGGGCTGGTC GAGATGACGC GCAAGCGCAC CCGCGAGTCG
CTCGCCCACA TGCTGTGCGA ACCGTGCCCG ACCTGCGGCG GCCGCGGCCA GACCAAGACC
GCGCGCAGCG TCTGCTACGA CATCCTGCGC GAGATCCTGC GCGAGGCGCG CCAGTTCAAC
CCGAAGGAGT TCCGCGTCAT CGCCTGCGCG GCGGTGGTGG AGATGCTGCT CGACGAAGAA
AGCCAGCACA TCGCCGGCCT CTCCGACTTC ATCGGCAAGC CGATCTCGCT GCAGGTCGAG
GCGACGATGA ATCCGGAGCA GTACGACATC GTGCTGCTGT GA
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| Protein sequence | MQDILVNWAP QETRVAIVEN GAVQELHVER TLERGLVGNV YLGKVARVLP GMQSAFIDIG
LERAAFLHVA DVHVAGQSIG RNSHGDSAVP PIEKLVYEGQ SLVVQVIKDP IGTKGARLST
QISVAGRLLV YLPQDEHIGI SQKIGSHELR EQLRQRMAVL VGTRDSGGGG GFILRTNAED
ATDAELAEDI AYLRKAWATM RALALKSAAG TLLHEDLNLA QRVLRDLVNE NTQSIRIDSR
TQFEALREFG QQFMPSAVGR LQHYKGERPI FDLFSIDQEI ERALARRVDL KSGGYLVVDQ
TEALTTIDVN TGGFVGARNF DDTIFKTNLE AGQAIARQLR LRNLGGIIII DFIDMTRPEH
QEQVLAELRK QLARDRTKTT ISGFTQLGLV EMTRKRTRES LAHMLCEPCP TCGGRGQTKT
ARSVCYDILR EILREARQFN PKEFRVIACA AVVEMLLDEE SQHIAGLSDF IGKPISLQVE
ATMNPEQYDI VLL
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