| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1945 |
|---|
| Symbol | |
|---|
| ID | 6161351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 2109422 |
|---|
| End bp | 2110012 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641664714 |
|---|
| Product | uncharacterized peroxidase-related enzyme |
|---|
| Protein accession | YP_001790977 |
|---|
| Protein GI | 171058628 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR01926] uncharacterized peroxidase-related enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.449613 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACGC CCGCTCGACC GCCCATCAGC CGCTACCCGG TGCCCGACCT CGCAGAGCTG
CCGGCCGACC TGCGCGAGCG CATCCTCGCC GTGCAGGAAA AGGCCGGGTT CGTGCCCAAC
GTGTTCCTGT CCCTGGCGCA CCGGCCTGAC GAATGCCGGG CGTTCCTCGA CTATCACGAC
GCGCTGATGC TGCGCCCGTC CGGTCTCGGC AAGGGCGAGA AGGAGATGAT CGTGGTGGCC
ACCTCGGGCG CCAACCGCTG CCTGTATTGC GTGGTGGCGC ACGGTGCCAT CCTGCGCATC
TACGAGAAGG CGCCGCTGCT CGCCGACGCC GTGGCCATCA ACCATCACAA GGCCGACCTG
AGCGCGCGCC AGCACGCCAT GCTCGACTTC GCGCTCAAGG TCTGCACCGA CTCGGCCGCC
GTCGACGAGG CCGATTTCGC CGCCTTGCGG GCCCACGGCT TCTCGGAGGA GGACATCTGG
GACATCGGCG CCATCACCGC GTTCTTCGGC TTGTCCAACC GCATGGCCAA CCTGATCGGC
ATGCGGCCCA ACGACGAGTT CTACCTGATG GGCCGCGTGC CGCGCCGCTG A
|
|---|
| Protein sequence | MNTPARPPIS RYPVPDLAEL PADLRERILA VQEKAGFVPN VFLSLAHRPD ECRAFLDYHD
ALMLRPSGLG KGEKEMIVVA TSGANRCLYC VVAHGAILRI YEKAPLLADA VAINHHKADL
SARQHAMLDF ALKVCTDSAA VDEADFAALR AHGFSEEDIW DIGAITAFFG LSNRMANLIG
MRPNDEFYLM GRVPRR
|
|---|
| |