| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1944 |
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| Symbol | tolB |
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| ID | 6161350 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2107889 |
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| End bp | 2109172 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664713 |
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| Product | translocation protein TolB |
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| Protein accession | YP_001790976 |
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| Protein GI | 171058627 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.526613 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCTC GTAGACAGTT TTCCGGCCTT GCCCTGGGTT TGTTGGGCGG ACTGAACGCA
ACCGCGTCCC GGGCGCAGTT CCGTGTCGAG ATCTCGGGGG TCGGCGCCAC CCAGGTGCCG
ATCGCCGTGC TGCGCCTGCG CGACGAGGAC AAGGCGCCGC AGCCGGTCTC GGCGATCGTG
CGCGCCGACC TGGAGCGCAG CGGCCTGTTC AGGAGCGTCG AGCCCGGCAA CGTCGCCCAC
GACGAGACCA GCCGCCCGGT CTTTTCGGAC TGGCGCAGCC TCGGCAGCGA CGCCCTGGTG
GCCGGCTCGG TCACCCGCCT GGCCGACGCG CGTTTCGACG TGCGCTACCG GCTGTGGGAC
GTGGTCAAGG GCAGCGAACT GGCCGCCCAG GCGCTCAGCG TCGCCAAGGA CGACCTGCGT
CTGGCCGCGC ACCGCATCGC CGACGACGTC TACCAGAAGC TGACCGGCGA ACGGGGGGTC
TTCTCGACCC GCATCGCCTA CGTGTCCAAG GCCGCCAACC GCTACACGCT GTGGGTGGCC
GACGCCGACG GCGAAAACGC CCAGGCCGCC GTCGGCGGGC CCGAGCCGAT CATCTCGCCG
GCCTGGTCGC CCAACGGGCG TGAGCTGGCC TACGTGTCGT TCGAGGCGCG CAAGGCGGTG
GTCTACGTGC AGGACGTGCT GACCAGCAAG CGCCGCGTGA TCGCCAACTA CAAGGGCTCG
AACAGCGCGC CGGCCTGGTC GCCCGACGGC AACCAGCTGG TCGTCACGCT GACACGCGAC
GGCCTGTCGC AGCTCTACAC GATGAGCCGC ACCGGCGGCG ACCTGCGTCG GCTGACCACC
AGCAGCGGCA TCGACACCGA AGCGGCCTGG TCGCCGGACG GCAAGAGCGT CTATTTCGTC
AGCGACCGCG GCGGCGGCCC GCAGATCTAC CGCGTTGCCG CAGGGGGCGG CAATGCCGAG
CGCGTCACGT TCGCGGGCAA CTACAACATC AGCCCGGCGC TGAGCCCGGA CGGGCGCTAC
ATGGCGTATG TGTCGCGCCT GAACGGCAGC GCCTTCCGCC TGACGCTGAT GGAGCTGGCC
ACCGGAACCA TCACCACCCT GACCGACACC AATGACGATG AAAGCCCCGG CTTTGCGCCC
AACAGCCGCC TGATCATCTA CGCCACCCGC GCAGGCGGGC GCGACGTGCT GATGACCACC
ACGCTCGACG GCAGCATCAA GGCCCGGCTC GGCGCACCGC AGGCCGACGT GCGCGAGCCG
ACCTGGGGGC CTTTCGGCCG CTGA
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| Protein sequence | MTSRRQFSGL ALGLLGGLNA TASRAQFRVE ISGVGATQVP IAVLRLRDED KAPQPVSAIV
RADLERSGLF RSVEPGNVAH DETSRPVFSD WRSLGSDALV AGSVTRLADA RFDVRYRLWD
VVKGSELAAQ ALSVAKDDLR LAAHRIADDV YQKLTGERGV FSTRIAYVSK AANRYTLWVA
DADGENAQAA VGGPEPIISP AWSPNGRELA YVSFEARKAV VYVQDVLTSK RRVIANYKGS
NSAPAWSPDG NQLVVTLTRD GLSQLYTMSR TGGDLRRLTT SSGIDTEAAW SPDGKSVYFV
SDRGGGPQIY RVAAGGGNAE RVTFAGNYNI SPALSPDGRY MAYVSRLNGS AFRLTLMELA
TGTITTLTDT NDDESPGFAP NSRLIIYATR AGGRDVLMTT TLDGSIKARL GAPQADVREP
TWGPFGR
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