| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1943 |
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| Symbol | |
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| ID | 6161349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2107239 |
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| End bp | 2107829 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664712 |
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| Product | peptidoglycan-associated lipoprotein |
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| Protein accession | YP_001790975 |
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| Protein GI | 171058626 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | [TIGR02802] peptidoglycan-associated lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.53224 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCCAGAA TCAACCACGA CATCCGCGGC GGCCTGCTGG CCACCGGTAC CGCACTGCTG
CTCCTGCTGG GCGGCTGCTC GACCAGCACG CGCCTGGAGC CGGCCGCGCC GGTCGAAGAC
CGCAGCGTCG GAGCCGGCTC AGGCTCGACG GGGGCGTCGG GCAGCAGCAG CAGCAACGGC
AGCTCGACCG GCCAGACCAG CGAGTCGCGC GTGGCGACGC TCGACCTCGG CAAGGGCACC
GACATCGGCA TGGGCAACGC CGGTCTGCCG CGCGTGGTCT ATTTCGATTT CGACAGCTAC
GTCGTCAAGG ACACCTACCG GCCGGTCATC GAGGCCAACG CGAAGTACCT GGGCGTCGAC
CGCAAGCGCC AGATGCTGAT CGAGGGTCAC ACCGACGAAC GGGGCGGCCG CGAATACAAC
CTGGCGCTCG GCCAGCGTCG CGCCGAGGCG GTGGTGCGTG CGCTGGCCCT GCTCGGCGTG
CCCGACAGCC AGACCGAAGC CGTGAGCTAC GGCGAGGAAC GCCCGGCCGC CTCCGGCGCT
GACGAAGCCG CCTGGGCGAA GAACCGCCGC GCCGAACTGA AGGATCGCTG A
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| Protein sequence | MSRINHDIRG GLLATGTALL LLLGGCSTST RLEPAAPVED RSVGAGSGST GASGSSSSNG
SSTGQTSESR VATLDLGKGT DIGMGNAGLP RVVYFDFDSY VVKDTYRPVI EANAKYLGVD
RKRQMLIEGH TDERGGREYN LALGQRRAEA VVRALALLGV PDSQTEAVSY GEERPAASGA
DEAAWAKNRR AELKDR
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