Gene Lcho_1935 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1935 
Symbol 
ID6160440 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2098568 
End bp2099281 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content73% 
IMG OID641664701 
Producthypothetical protein 
Protein accessionYP_001790967 
Protein GI171058618 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.236063 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTCCCG ACTACCAACC GCAAGACCGT TCCCGGCGCT TCATCGGCCT GGCGGTGGTC 
GCCTTGCTGC ATGTGCTCGT CATCTGGGGC CTGATGTCGG GCCTGGCACG CAAGGCGATC 
GAGGTGATCA AGAAGCCGAT CGAGGTGGCG ATCGTGGACC AGCCTCGACC GGCGGATCCG 
GCGCCGCCAC CTCCACCACC GCGCGCACCG CCACCCCCTT CGCCCAGTCC GCCCCGGGTG 
ATCGACCGTC CGCCGCCGCC GACACCCGCG GCACCGGCCC CCGCTCCGGC GCCCGTTGTC 
ACGGCGCCCG AAATCGTCGT GCCGGCGACG GCCCCGGCGC CGGCGATTCA GGTGACGCAG 
GAGCGTGCGC CCGAAAAGCC CGCCGAGACC CGCCCGGCAG CCCCCCCTGC GCCGCCGCCC 
GCCGCAGCAC CGGCCACCCG GCCCGCACCG CGCGCCGAGG TGGCGATCGT CTGCCCGGGC 
TACCAGAACA TCCTGAAGTC GGCCCTGGCC GGCGAGTGGG ACCGCGTGGG CATCACCGGC 
GACGTCAAGG TCGTGATCCG CGTGCGCGGC AATCAGATCC TGGACGTGAC GCCGCAATCG 
GGGCCGCGCG AGTACTACCG GGCGGTCCAG CGGGCGGTCA GGCGCATGAA CTGCACCGTC 
GACGGCGCCG AGGAACAGCT CGTACCCCTG GAGATCGGCT TCCGCGAACC ATGA
 
Protein sequence
MGPDYQPQDR SRRFIGLAVV ALLHVLVIWG LMSGLARKAI EVIKKPIEVA IVDQPRPADP 
APPPPPPRAP PPPSPSPPRV IDRPPPPTPA APAPAPAPVV TAPEIVVPAT APAPAIQVTQ 
ERAPEKPAET RPAAPPAPPP AAAPATRPAP RAEVAIVCPG YQNILKSALA GEWDRVGITG 
DVKVVIRVRG NQILDVTPQS GPREYYRAVQ RAVRRMNCTV DGAEEQLVPL EIGFREP