Gene Lcho_1934 details

Gene Information

• Locus tag: Lcho_1934
• ID: 6160439
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 2097917
• End bp: 2098471
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 641664700
• Product: elongation factor P
• Protein accession: YP_001790966
• Protein GI: 171058617
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0231] Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)
• TIGRFAM ID: [TIGR00038] translation elongation factor P

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 31
• Fosmid unclonability p-value: 0.204738
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGATTG CACAGGAAAT CCGCGCCGGC AACGTGATCA TGCACGGCAA AGACCCGATG 
GTCGTGCTCA AGACCGAATA CAGCCGCGGC GGCCGCAACT CGGCCACCGT GCGCATGAAG 
CTCAAGAGCC TCTTGAGCAA CTCGGGCACC GAAGTCGTCT TCAAGGCCGA CGACAAGATG 
GACCAGATCA TCCTCGACAA GAAGGAGTGC ACCTACTCCT ACTTCGCCGA CCCGATGTAC 
GCGTTCATGG ACGCCGACTT CAACCAGTTC GAAGTCGAAG CCGAGAACAT GGGCGACGCC 
ATCAGCTACC TCGAAGACGG CATGGCCGTC GAAGTGGTGT TCTACGACGG CAAGGCGATC 
TCGGTCGAAC TGCCGACGTC GCTGGTGCGC GAAGTGACCT GGACCGAGCC GGCCGTCAAG 
GGCGACACCT CGGGCAAGGT GCTCAAGCCG GCCAAGCTGG CCACCGGTTT CGACATCCAG 
GTGCCGATCT TCGTGGCGCA AGGCGACAAG ATCGAAATCG ACACCCGCAC GCACGAGTAC 
CGCAAGCGCG TCTGA 

 

Protein sequence

MKIAQEIRAG NVIMHGKDPM VVLKTEYSRG GRNSATVRMK LKSLLSNSGT EVVFKADDKM 
DQIILDKKEC TYSYFADPMY AFMDADFNQF EVEAENMGDA ISYLEDGMAV EVVFYDGKAI 
SVELPTSLVR EVTWTEPAVK GDTSGKVLKP AKLATGFDIQ VPIFVAQGDK IEIDTRTHEY 
RKRV