Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1928 |
Symbol | |
ID | 6160197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2090156 |
End bp | 2092069 |
Gene Length | 1914 bp |
Protein Length | 637 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641664693 |
Product | PpiC-type peptidyl-prolyl cis-trans isomerase |
Protein accession | YP_001790960 |
Protein GI | 171058611 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0492911 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTGATT TTGTCCGTCG CCACAACCGC CTGCTGCAAT TCGGCCTGGC CTTGGTGATC GTTCCGTCGT TCCTTGTCGT CGGGATTCAG GGTTACGACC AGTTCAGCGC AAGCAACGAA GCGGTCGCCA ACATCGACGG CCGCGCCATC ACGCAGACCG AATGGGACGC CGCACATCGC CAGCAGGTCG AGCGCGTGCG TGCGCAGATG CCCGGCGTCG ATGCCAAGCT GCTCGACAGC CCGGCGATCA AGCAGAAGGT GCTCGACGAC CTGGTGCGTG AGCGGGTGAT GCTCGTGGCC GCCCAGAAGC TGCTGCTGGC ACCGACCGAC CAGCGTCTGC AGCGCCTGTT CGCCACGGAT CCGCAGTTTG CGAGCCTGCG CAACGCCGAC GGCTCGGTGC GCAAGGATCT GCTCGAAGCG CGCGGCATGA CCTCCGAACA GTTCGCCCAG CAGTTGCGCC AGGAGTTCGC CCTGCGCCAG GTTTCTCTCG GCCTGGCCGG CTCCGCGCTG GCATCGCCCG CGGTGACCGC GCGTGCGATG GACTCGTTCT TCCAGCAGCG CGAGGTGCAG GTCGCGCTGT TCCCGGCCAA GGACTATCTG TCGAAGGTTT CGGCTTCGGA TGCCGAGCAG CAGGCCTATT ACGACGACCC CAGGAATGCC GCGCAATTCC AGTCGCCGGA AACGGTATCG GTCGAGTATG TGGTGCTCGA CCTGCCGGCC GTGACGGCAG GCATCAACGT CAACGAAGAC GATCTGCGCA AGTACTACGA CGAAAATGCG GCGCGCTACG AACAGCCGCA GGAACGGCGT GCCCGCCACA TCCTCGTCAA GCTCGACGCG GATGCCTCCG ACGACGCCAA GGCAAAAGCC AGGGAAAAGG CCGCGGCGCT GCTGGCCGAG GTGCAGAAGA ACCGCGCCGC CTTTGCCGAT CTGGCCCGCA GACAATCCGA CGACCCCGGC TCTGCCGCAC AAGGCGGCGA CCTCGACTGG ATCGCTCGTG GCGCGATGGT CAAGCCGTTC GAGGACGCCG TCTTCGGGCT CAAGAAGGGT GAGCTCGGCG GCATCGTCGA AACCGAATTC GGCCTTCACG TCATCGAGGT GACCGACACC CGCGGTGGTG AAAAACGCGC CTTTGCCAAC GTGCGCGGCG AACTCGAGGC CGAAGTCAGG AAACAGCTCG CTCAGAAGCG TTACGCCGAA CTGGCCGAGC AGTTCACCAA CCTGGTCGAA CAGGAAGACA CGCTCAAGCC GGTGGCCGAT GCGCTCAAGC TCGAACTGCA CAAGGCCGAC AAGCTCGGCC GCGTCGCGCC TGCGCAACCG GGCAATGTGC TTGCGTCGCC CAAGGTGCTG GAAGCGATCT TCCAGCCCGA ATCGCTGAGC GGCAAGCGCA ACATCGAGCC GGTCGAGGCG GCCGCCAACC AGCTCGTCGC GGCTCGCGTG CTCGAACATG CGCCTGCGCG CAAGCAACCG CTGGCCGAAG TCGGCGAACG GCTGCGCAAC GCGGTGATCA GCGAGAAGGC GGCCAAGGCC GCTGCGGACG ACGGCAAGAC CAAGCTGGCC GAGTGGCAAT CCAAGCCCGA AAGCGCCAAG CTCGGCGCGG CCCTGGTGCT ATCGCGGACG CAGGCCCAAG GTCAGCCACG CGAAGTGGTG GACGCCGTTC TGCGCGCACC CGCCGACAAG CTGCCGGGCT GGATCGGCGT CGAACTGGGT GGACAGGGTT ATGCCGTGAT CAAGCTGGCG AAGGTGCTGG CCGCCGACCC GGCCGCGACC GGGGATCCGG AGCGCGTCAA GGCCCAATAC GCACAACTGT GGTCGCAAGC GGAATCCGAC GCCTACTACC GCGCCCTGAG CAAGCGATAC AAGGCCGAGG TCACCGACAA GGGCAAGGCC GCGGTCGGAA CCGCCACTCC TTGA
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Protein sequence | MFDFVRRHNR LLQFGLALVI VPSFLVVGIQ GYDQFSASNE AVANIDGRAI TQTEWDAAHR QQVERVRAQM PGVDAKLLDS PAIKQKVLDD LVRERVMLVA AQKLLLAPTD QRLQRLFATD PQFASLRNAD GSVRKDLLEA RGMTSEQFAQ QLRQEFALRQ VSLGLAGSAL ASPAVTARAM DSFFQQREVQ VALFPAKDYL SKVSASDAEQ QAYYDDPRNA AQFQSPETVS VEYVVLDLPA VTAGINVNED DLRKYYDENA ARYEQPQERR ARHILVKLDA DASDDAKAKA REKAAALLAE VQKNRAAFAD LARRQSDDPG SAAQGGDLDW IARGAMVKPF EDAVFGLKKG ELGGIVETEF GLHVIEVTDT RGGEKRAFAN VRGELEAEVR KQLAQKRYAE LAEQFTNLVE QEDTLKPVAD ALKLELHKAD KLGRVAPAQP GNVLASPKVL EAIFQPESLS GKRNIEPVEA AANQLVAARV LEHAPARKQP LAEVGERLRN AVISEKAAKA AADDGKTKLA EWQSKPESAK LGAALVLSRT QAQGQPREVV DAVLRAPADK LPGWIGVELG GQGYAVIKLA KVLAADPAAT GDPERVKAQY AQLWSQAESD AYYRALSKRY KAEVTDKGKA AVGTATP
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