| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1920 |
|---|
| Symbol | |
|---|
| ID | 6159877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 2082116 |
|---|
| End bp | 2083063 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641664684 |
|---|
| Product | peptidase M23B |
|---|
| Protein accession | YP_001790952 |
|---|
| Protein GI | 171058603 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.123446 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCTC TTCGATCCGT TGCCCGCGCA ACGCGCTATT TCCTGCTGGG TCTGGCCACG
CTCTGGCTCG CCGGCTGTGC CGGCAACTTC AAGCCGCCGC GCGCACCCGT GGAAGACCGC
GGCTTCGGCA CCAGCCGGCC CGCTGCGGTG GCAGCGCCGG CGGCCGCATC GGCGCCGGTG
GCCAGCCCCG TCAAGCCGCA ACTGAACCTC GAGAACGCCG GCAAGCCGGG CTACTACACC
GTGCGCTCCG GCGACACGCT GATCCGTGTC GGCCTCGAGA CCGGCCAGAA CTGGCGCGAC
CTGCAACGCT GGAACGAGCT CGACAACGCC GACCGGATCG AGGTCGGCCA GGTGCTGCGG
GTGGTGCCGC CAGGGCAGGA CCCGACGCAG ACGGCCGCCC GGCCGATCGT GGTGGCGCGC
GCCGAGTCGC GCCCGCTCGA GAGCCGCCCG TTGCCGTCGG CGTCGGCATC TGCCTCGCCA
TCGACCGGTG CGGGCAGCGC GCCGATGATC ATCCCGCCGC CGGCGCCGGC CGTCACGCCG
TCTCCCGCAC CGGCTCCCGC TGCCGCGACG AGCAACGACG AGGACATGAG CTGGTCCTGG
CCGGCGCAAG GCAACGTGGT GAGCGGCTTC GACGAAAGCC GCAACAAGGG CCTGGCGATC
GGCGGCCGGC CCGGTGATCC GGTGATGGCC GCGGCCGACG GCCGGGTCGT CTACGCCGGC
TCCGGCCTGC GTGGTTACGG CAACCTGGTG ATCATCAAGC ACAACGAGAC CTACCTCACC
GCCTACGCGC ACAACCAGGC CCTGCTGGTG CGCGAGGACC AGCCCGTGCG GCGCGGCCAG
AAGATCGCCG AGATGGGCTC GACCGACGCC GAACGGGTGC AGTTGCACTT CGAGATCCGT
CGCCGCGGCA AGCCGATCGA TCCGGCCCGC TTGTTGCCCG CCCGTTGA
|
|---|
| Protein sequence | MTSLRSVARA TRYFLLGLAT LWLAGCAGNF KPPRAPVEDR GFGTSRPAAV AAPAAASAPV
ASPVKPQLNL ENAGKPGYYT VRSGDTLIRV GLETGQNWRD LQRWNELDNA DRIEVGQVLR
VVPPGQDPTQ TAARPIVVAR AESRPLESRP LPSASASASP STGAGSAPMI IPPPAPAVTP
SPAPAPAAAT SNDEDMSWSW PAQGNVVSGF DESRNKGLAI GGRPGDPVMA AADGRVVYAG
SGLRGYGNLV IIKHNETYLT AYAHNQALLV REDQPVRRGQ KIAEMGSTDA ERVQLHFEIR
RRGKPIDPAR LLPAR
|
|---|
| |