| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1919 |
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| Symbol | rumA |
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| ID | 6159876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 2080564 |
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| End bp | 2082060 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664683 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001790951 |
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| Protein GI | 171058602 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.149056 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACCCT CGGATGAATG GTTGCAGGTC GAGTCGCTCG ACCTCGATGC ACAGGGCGTG
GCCCGCAACA GCGAGGGCAA GGTGGTCTTC ATCGAAGGCG CCTTGCCGGG CGAGCGGGTG
CAGGTGCACG CGCAACGCCG CAAGAACAAC TGGGAGCAGG CCGCGCTGGT GACGATCGGG
CGCGAGAGCG CCCAGCGCGT GCGCCCCGGC TGCCCGCACT TCGGCCTGCA CGCCGGTGCC
TGCGGCGGCT GCAAGATGCA GCATTTCCAC GCCAGCGCGC AGGTGGCGGT CAAGCAGCGC
ACGCTCGAGG ACAACCTCTG GCATCTCGGC AAGGTCCGCA CCGAACGGGT CCTGCGCCCG
GTCGAAGGGC CGACCTGGGG CTACCGCTAC CGCGCCCGCC TGTCGGTGCG CTACGTGGCC
AAGAAGGGCG TCGTGCTGGT CGGTTTCCAC GAGCGCAAGT CGCGCTACGT GGCCGACATG
CGCAGCTGCG CCGTGCTGCC GCCGCACATC AGCGCGATGC TGCTGCCGCT GCGCGACCTG
ATCGACAGCA TGGAGGCCCG CGAGCGCCTG CCGCAGATCG AGCTGGCGGT GGGCGAGTCG
AGCCAGGGCC TGGAAAATGT TCTGGTGAAT GCGCTGGTGC TGCGCAACCT CGAGCCGCTC
AGCGCCGCCG ACGCCCAGCG CCTGCGCGAC TTTGCCGCCA TCCATCCGGT GCAATGGTGG
CTGCAGCCCA AGGGACCGGA GACGGTGCAC CTGCTCGACG AGGGCGTCGG TCCGAAGCTG
GCCTATTCGC TGCCCGAATA CGGCGTCACG ATGCCGTTCA AGCCGACCGA CTTCACGCAG
GTCAACCACC ACATCAACCG CGTGCTGGTC GGCAAGGCGC TGGGCCTGCT GAAGGTGCAG
GGCAACGAGC GGGTGATCGA CTGGTTCTGC GGCCTGGGCA ACTTCACGCT GCCGCTGGCC
ACCCAGGCGC GCGAGGTGCT GGGCATCGAG GGCAGCGAGA CGCTGGTGCA GCGCTCGCGC
GAGAACGCCC AGCTCAACGG GCTGGCGCAC AATGCCACGT TCGCGGCGCG CAACCTGTTC
GAGCTGTCAC CCGCCGATCT GGCTGCCTAC GGCTCGGCCG ACCGCTGGCT GATCGACCCG
CCGCGCGAGG GTGCGTTCGC GCTCTCGAAG GCCCTGGCCG AGGTGCGCCA GCAGCCGATC
GACGGCTACA CGCCGCCGCA GCGCATCGTC TACGTCAGCT GCAATCCGTC GACCCTGGCA
CGCGACGCCG GCCTGCTGGT GCACCAGGCC GGCTACCGCT GCACGGCGGC GGGTGCGGTC
AACATGTTCC CGCACACCGC GCACGTCGAG TCGATCGCGG TGTTCGAGCG CATCGACGGC
TGGCAGCTGC CGGTGCCCGC GCCGGCACCG GAGCTTGCAG CCGAGCCCGA ATCGACCGAC
CTGCCGCCGG CCGTCGAGAC CGCCGGCGCC GATCAGGCCA GCGCGTCGAG CAGCTGA
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| Protein sequence | MTPSDEWLQV ESLDLDAQGV ARNSEGKVVF IEGALPGERV QVHAQRRKNN WEQAALVTIG
RESAQRVRPG CPHFGLHAGA CGGCKMQHFH ASAQVAVKQR TLEDNLWHLG KVRTERVLRP
VEGPTWGYRY RARLSVRYVA KKGVVLVGFH ERKSRYVADM RSCAVLPPHI SAMLLPLRDL
IDSMEARERL PQIELAVGES SQGLENVLVN ALVLRNLEPL SAADAQRLRD FAAIHPVQWW
LQPKGPETVH LLDEGVGPKL AYSLPEYGVT MPFKPTDFTQ VNHHINRVLV GKALGLLKVQ
GNERVIDWFC GLGNFTLPLA TQAREVLGIE GSETLVQRSR ENAQLNGLAH NATFAARNLF
ELSPADLAAY GSADRWLIDP PREGAFALSK ALAEVRQQPI DGYTPPQRIV YVSCNPSTLA
RDAGLLVHQA GYRCTAAGAV NMFPHTAHVE SIAVFERIDG WQLPVPAPAP ELAAEPESTD
LPPAVETAGA DQASASSS
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