Gene Lcho_1914 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1914 
Symbol 
ID6160309 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp2071017 
End bp2071655 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content69% 
IMG OID641664678 
ProductTetR family transcriptional regulator 
Protein accessionYP_001790946 
Protein GI171058597 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.183306 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTTGG CCAAGCCTGC ACATGCCTAT TCGTCGGCAC AACACCATCG GCGCCGGCTG 
CTCGACGGCC TGGCCGTCAG CGTGGCCCGA CGCGGTTATT CGGACACCAC CATCTCGGAC 
ATCGCGGCGG CCGCCCGGGT CTCCAAGCGC ACCTTCTACG AGCATTTCAG CTCCAAGCAG 
CAATGCATGA TCGCGCTCTA CGAGAGCGCG AGCGAACTCA GCCGCCGGCA GATGGAAGTC 
GCCATCGACG AGTCGCTCGG CTGGCCCGAG CAGGTCGAAG CCGCGGTTCG CCGCTACTTC 
AACCACCTGA GCATGCACCC GGTGCTGATG CGCGCGCTGT TCATGGAGAT CCTGTCGCTC 
GGCCCGGACG GCCTGAAGGC GCGGCGCGAC AACCTCAACG CGCTGGCCGG CACGATCGCG 
CGCAGCGCCG GCACCCAGGG CGTGACGCTG AGCCTGCCGC AGGCGGCGTC GCTGGCGGGC 
ATGCTGTCGG AATGGGTGCT GCTGGCCATC GAGGAAGACC GCGTGGCGGC CTTGCCCGAT 
GACGCGCCGG TGGTCGCCGC GATGCTGCGG GCGGCGATCG TCGGCCACAA GCTGATCGAG 
CCGCAGCCGA CCCAGCCGCC GCAATCCGCG ACCGCCTGA
 
Protein sequence
MDLAKPAHAY SSAQHHRRRL LDGLAVSVAR RGYSDTTISD IAAAARVSKR TFYEHFSSKQ 
QCMIALYESA SELSRRQMEV AIDESLGWPE QVEAAVRRYF NHLSMHPVLM RALFMEILSL 
GPDGLKARRD NLNALAGTIA RSAGTQGVTL SLPQAASLAG MLSEWVLLAI EEDRVAALPD 
DAPVVAAMLR AAIVGHKLIE PQPTQPPQSA TA