| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1913 |
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| Symbol | |
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| ID | 6160308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2069677 |
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| End bp | 2070927 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641664677 |
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| Product | RNA-binding S4 domain-containing protein |
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| Protein accession | YP_001790945 |
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| Protein GI | 171058596 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.162231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCACGC TCAAACTGAA GAAACCCCTC AACCCGACGG AGACCGAAAC CACGCGGCCG
CGACTGCCCG TGCGCAACGG CGTCAGCGGC CCCCGTCCGC GGCCGACGCT GGCGCAGGCC
CAGGCCGAAC GGGCGCGCCG TGCCGAGGAA TACGGCGGCC AGCCCGTCGA TCCGGATCGC
CGCCGGCCGC CGCAGCGTCA GGATCAGGAC CGCCCCCCGA TGCCGCGTCG TGACGACCAG
GGCCGCGGCT TTGCGCCGCG CCGTGACGAC CCGCCGCAGC GGCCGGCCTA TCGCGACGAG
CGCCCCGCAC GCAACGAGCC GCAGGTCCGC GACGATCGAC GCAGCGGGCC GCCCGCCGAA
CGCACGCCGT GGTATGCGCC GCAGTCGCAT CAGGAGGCAC CGGCCGCACG GGCGCGGCGG
GTGCTCGAGC CGGCCCGCCC GGTGCGACCG GGCACGCCGT CGCAGCGCCC TGCCCGGCCG
GCCGAGGTGC CCTCCTCGCC CCTGGCCGGC GAAGGTGAAC GCCTGTCCAA ACGCATGGCT
GCACTCGGTC TGGCGTCGCG CCGGGAGGCC GACGAGTGGA TCGAGGCTGG CTGGGTGCGG
GTCGACGGCA AGATGGCGGT GCTCGGCCAG CGGGTCGGCC CGCAGGCGAA GATCCACGTC
GATCCTGCCG CGCACAAGCA GCAGGCCCAG CGCGTCACGA TCCTGGTCAA CAAGCCGGTC
GGCTACGTCA GTGGCCAGGC CGAGGACGGC TACGAGCCGG CCGCCGCGCT GATCCGACCC
GAAAACCGCT GGAGCGAAGA CAGCTCGGGC GTCAACTGGC ACCCCGGCCA GCTGCGCGGG
CTGGCACCGG CCGGCCGGCT CGACATCGAT TCGGTCGGTC TGCTGGTGCT GACGCAGGAC
GGCCGTGTCG CCAAGCTGCT GATCGGCGAC GAATCGCTGG TCGAGAAGGA ATACCTCGTG
CGCGTGGCCT ATCAAGGCCA GGGCCGGCTG CCCGACAGCG CGCTGGCGTT GCTCAATCAC
GGCCTCGAGC TCGACGGTCA GGCGCTGCGG CCGGCCAAGG TCAGCTGGCA GAACGAGGAT
CAGCTGCGCT TCGTGCTGCG CGAGGGCAAG AAACGCCAGA TCCGGCGCAT GTGCGAGGCC
GTCGGCCTGC AGGTGCTGGG CCTCAAGCGG GTGCGCATCG GCAGCGTCTC GCTCGGCCAT
CTGCCGGCCG GGCAATGGCG TTACCTGCGC CGCGACGAGT TTTTCATCTG A
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| Protein sequence | MVTLKLKKPL NPTETETTRP RLPVRNGVSG PRPRPTLAQA QAERARRAEE YGGQPVDPDR
RRPPQRQDQD RPPMPRRDDQ GRGFAPRRDD PPQRPAYRDE RPARNEPQVR DDRRSGPPAE
RTPWYAPQSH QEAPAARARR VLEPARPVRP GTPSQRPARP AEVPSSPLAG EGERLSKRMA
ALGLASRREA DEWIEAGWVR VDGKMAVLGQ RVGPQAKIHV DPAAHKQQAQ RVTILVNKPV
GYVSGQAEDG YEPAAALIRP ENRWSEDSSG VNWHPGQLRG LAPAGRLDID SVGLLVLTQD
GRVAKLLIGD ESLVEKEYLV RVAYQGQGRL PDSALALLNH GLELDGQALR PAKVSWQNED
QLRFVLREGK KRQIRRMCEA VGLQVLGLKR VRIGSVSLGH LPAGQWRYLR RDEFFI
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