Gene Lcho_1901 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1901 
Symbol 
ID6159801 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2058549 
End bp2059193 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content71% 
IMG OID641664664 
ProductGDSL family lipase 
Protein accessionYP_001790933 
Protein GI171058584 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2755] Lysophospholipase L1 and related esterases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.0627412 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATCGGGC TGCGCGCCGC CGGCGCAGGG GCGATCGCCG CACTGGCGTC TTCAGGCACG 
GCACTCGCGG CGGCAGCGCA GCAACGCAAG ATCCTGGTGG TCGGCGACAG CCTGTCGGCC 
GAATACGGCC TGCCCCGCGG CAGCGGCTGG GTCGCGTTGC TCGAGGCCCG ACTGGCGGCG 
CACAAGCCGG CCTACACCGT GATCAACGCC AGCATCAGTG GCGACACCAC CTCGGGTGGC 
CGCTCGCGCC TGCCGGCGCT GCTCGTCCAG CACAAGCCCA GTCACGTGGT GATCGAGCTC 
GGCGGCAACG ACGCCCTGCG CGGCCTGCCG CTGGCCATGA CCGAAGCCAA CCTGCTGGCG 
ATGGCGCAGG CGGCCCGCGC TGCTGGCGCA GCAGTCATGC TCGTGGGCAT GCAGGTGCCG 
CCCAACTACG GGCAGGCCTA CAGCCGCGAT TTCGCCGGAC TGTTCGGCAA GGTGGCCCAG 
CGCGAACGTG CCGCGCTGGT GCCGTTCCTG CTCGCCGGCA TTGCCGACGC GTCCGACGCC 
CAGAAGTGGT TCCAGCCGGA CCGCATCCAC CCCACCGCCC AAGCGCATCC GCGCATGCTC 
GAAAACGTCT GGCAGGTGAT GACGGGCTGG CTCGGGCGGG GCTGA
 
Protein sequence
MIGLRAAGAG AIAALASSGT ALAAAAQQRK ILVVGDSLSA EYGLPRGSGW VALLEARLAA 
HKPAYTVINA SISGDTTSGG RSRLPALLVQ HKPSHVVIEL GGNDALRGLP LAMTEANLLA 
MAQAARAAGA AVMLVGMQVP PNYGQAYSRD FAGLFGKVAQ RERAALVPFL LAGIADASDA 
QKWFQPDRIH PTAQAHPRML ENVWQVMTGW LGRG