Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1899 |
Symbol | |
ID | 6159833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 2055348 |
End bp | 2057624 |
Gene Length | 2277 bp |
Protein Length | 758 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641664661 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_001790931 |
Protein GI | 171058582 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.0360042 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGACGA CGCGCCTCGA CGTCGGGGCC GAGTCGGCTT CGCCGATCCT GCAACTGGCC GATGCGGTCG GCACGGCCGG CCAGCCCGAC GCCGGCCAGG AAACCGAGCG GCTCGAGCGG GCCCGTGCCT TTGCCGTGCC CTTGCTGAGC GGGCACCGGT TCGACACCGG TGAAGACGCG CTCGAACACG CGGACGGCGT GGCGCAGATC CTCAAGAGCG TGGGTGCCGC GCCGTCGATG CAGGCGGCGG TCTACCTGGT CTACGCCGGC GATTTCCTGA CCGACCCCGA GACGGTGGTC AGCCAGGCTT TCGGCCCGTC GTACGCGAGC CTGGTGACGC ACACGCGCAA GCTGGTGAAG CTGCAGCGCA GCGCGCGCGA TGCCTTGCTC GAGGAAACCG ACCAGGAGGT GCTGGCCGAG CAGCTCGAGC GCGTGCGCAA GATGCTGCTG GCGTTTTCAC ACGACCTGCG GGTGGTGCTG CTGCGGTTGG CGTCGCGGCT GCAGACGCTG CGCTTCCACG CGGCCAGCCG CACGCCGTGC CCGCGGGCCT TGGCGCGCGA GAGCCAGCAG GTGTTCGCGC CACTGGCCAA CCGGCTCGGC ATCTGGCAGA TCAAATGGGA GCTGGAGGAC CTGGCGTTCA GGTTCCTGCA GCCCGAGCAG TACAAGCGGA TCGCCCGCCT GCTCGATGAA AAACGCGTCG AGCGCGAGAC CGGCATCGAG CGTGCCCGCG AACACCTGGC ACAAGCCCTG GCGCAGGCGG GTGTGCAGGC GCAGGTACAG GGCCGGCCCA AGCACATCTA CAGCATCTGG AAAAAGATGC AGGGCAAGAG CCTCGATTTC TCGCGGGTCT TCGATGTGAG CGCGCTGCGG GTGATCGTCG CCGATGTGCG CGACTGCTAT GCCGCGCTCA GCCGCGTGCA CGAGCTCTGG CATGCGCTGC CCGACGAGTT CGACGACTAC ATCGCCCGGC CCAAGGCCAA CGGCTACCAG TCGCTGCATA CGGTGGTGCT CGACGACGAG CAGCGCCCGT TCGAGATCCA GATCCGCACC CGCGAGATGC ACGAACACGC CGAGAGCGGC GTGGCCGCGC ACTGGGCCTA CAAGGAGGCC GGCAGCAAGG GTTACGCCGG TGTCAGCGCA GCGGGCGACT TCGAGGATCG CGTGGCCCTG GCGCGCCGTG CGGTGCTGCA TCAGCTGCTG GCCTGGGAGC GCGATTTCGC CGGCCAGAGC GCGGCCCAGG CCGCCGGGCT GGGCGGGCAG GGCGCAGGCG CCGGGTTCTT CGAGGACCGC ATCTACGTGC TCACGCCGCA GGGCAGCGTG ATCGAGTTGC CGGCCGGGGC CACGGCGATC GACTTCGCCT ACCAGCTGCA CACCGACCTC GGCCACCGCT GCCGGGGCGC GCGTGTCGAC GGGGCGCTGG TGCCGCTGAT CACGCCGCTC AAGAGCGGAC AGACGGTGGA GATCGTCGCC GCCAAGGAGG GCGGGCCGTC GCTCGACTGG CTCAACCCGC AGCTCGGTTA TCTGCAGAGC CACCGCGCGC GGGCCAAGGC GCGCGCCTGG TTCAATGCCC GTGCCTTGCA GGACACCGTC GCACGCGGGC GCGAGGCGGT CGACAAGCTG CTGCAGCGCG AAGGCCGCAC GGCCATCAAG CTCGACGAGC TGGCCACGCA GCTGGGTTTC CGTCATGCCG AGGCGCTGTT CGAGGTGGTC GGCAAGGACG AGTATTCGTT GCGCAACATC GAGCTGCAGC TGCGCCCGCC CGAGCCGGTG GTCGAAGACG ACACGCCGGT GTTCAAGCGG TCACGCAGCC ATGCCGGCGG CGGCAATGGC GTGCTGGTGG TCGGTGTCGG ATCGCTGCTC ACGCAACTGG CGCATTGCTG CCGGCCGGCG CCGCCCGACG TGATCGGTGG GTTCGTCACC CGCAGCAAGG GCGTGGCGGT TCACCGCAAG GACTGCCTGA ACTTTCGCGA GATGGTGGCG CGCCACCCCG AGCGTGCGAT CCCTGTCACC TGGGGCAGCC AGGGCGCTTC TGACGGACGC AATGCGGTCT ACCCGGTCAA CGTCTCGGTG ACGGCCGTCG ACCGGCAAGG CCTGCTGCGC GACATCTCGG AGGTGTTCGC CAAGGAGAAG ATGAACGTCA CCGGCGTGCA CACCCGCTCG GTCAAGGGCA CGGCCTGGAT GACCTTCACA GTCGAGGTGG CCGACTCGGC GCTGCTGGCT CACGTGCTGA GCCTGGTCGC ATCGGTGAAC GGCGTGCGGA GCGCACAGCG CCGTTGA
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Protein sequence | MKTTRLDVGA ESASPILQLA DAVGTAGQPD AGQETERLER ARAFAVPLLS GHRFDTGEDA LEHADGVAQI LKSVGAAPSM QAAVYLVYAG DFLTDPETVV SQAFGPSYAS LVTHTRKLVK LQRSARDALL EETDQEVLAE QLERVRKMLL AFSHDLRVVL LRLASRLQTL RFHAASRTPC PRALARESQQ VFAPLANRLG IWQIKWELED LAFRFLQPEQ YKRIARLLDE KRVERETGIE RAREHLAQAL AQAGVQAQVQ GRPKHIYSIW KKMQGKSLDF SRVFDVSALR VIVADVRDCY AALSRVHELW HALPDEFDDY IARPKANGYQ SLHTVVLDDE QRPFEIQIRT REMHEHAESG VAAHWAYKEA GSKGYAGVSA AGDFEDRVAL ARRAVLHQLL AWERDFAGQS AAQAAGLGGQ GAGAGFFEDR IYVLTPQGSV IELPAGATAI DFAYQLHTDL GHRCRGARVD GALVPLITPL KSGQTVEIVA AKEGGPSLDW LNPQLGYLQS HRARAKARAW FNARALQDTV ARGREAVDKL LQREGRTAIK LDELATQLGF RHAEALFEVV GKDEYSLRNI ELQLRPPEPV VEDDTPVFKR SRSHAGGGNG VLVVGVGSLL TQLAHCCRPA PPDVIGGFVT RSKGVAVHRK DCLNFREMVA RHPERAIPVT WGSQGASDGR NAVYPVNVSV TAVDRQGLLR DISEVFAKEK MNVTGVHTRS VKGTAWMTFT VEVADSALLA HVLSLVASVN GVRSAQRR
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