Gene Lcho_1897 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1897 
Symbol 
ID6159831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2053592 
End bp2054362 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content69% 
IMG OID641664659 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_001790929 
Protein GI171058580 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.0333934 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAAGG GCAAGACCGC TCTGGTCACC GGTTCCACCA GCGGCATCGG ACTGGGCGTG 
GCACTCAGCC TCGCACGTCA AGGCGCCAAC GTGATCCTCA ACGGCTTCGG TGACGCCAGC
GGCCCGCAGG CCGAGGTGGC CGCACTCGGC GTCAAGGTGG GTTACCACGG CGCCGACATG
AGCAAGCCGG CCGAGATCGA GGCCATGATG GCCTACGCGC AGGCCGAGTT CGGCGGCGTC
GACATCCTCG TCAACAACGC CGGCATCCAG CACGTCGCGC CGGTGCAGGA CTTCCCGGTC
GAGCGCTGGG ACGCGGTGAT CGCGATCAAC CTCAGCTCGA ACTTCCACAC CACCCGCCTC
GCCCTGCCCG GCATGCAGGC GCGCAACTGG GGCCGCATCA TCAACATCGC GTCGGTGCAC
GGCCTGGTGG GCTCGGCGCA GAAGTCGGCC TACGTGGCGG CCAAGCACGG CGTGATCGGC
TTCACCAAGG TCACGGCACT CGAGAACGCC ACCACCGGCG TCACCTGCAA CGCCATCTGC
CCGGGCTGGG TGCTGACGCC GCTGGTGCAG AAGCAGGTCG ATGCGCGCGC CGCGCACGAC
GGTGTCGACA TCGCCGAAGC CACCCGTCGC CTGCTCGGCG AGAAGCAGCC GTCGATGCAG
TTCACCACGC CCGAGGAACT CGGCGAACTC GCCGTCTTCC TGTGCTCGCC CGCCGGCAAC
AACGTGCGCG GCGTGGCCTG GAACGTCGAC GGCGGCTGGA CGGCGCAGTA A
 
Protein sequence
MLKGKTALVT GSTSGIGLGV ALSLARQGAN VILNGFGDAS GPQAEVAALG VKVGYHGADM 
SKPAEIEAMM AYAQAEFGGV DILVNNAGIQ HVAPVQDFPV ERWDAVIAIN LSSNFHTTRL
ALPGMQARNW GRIINIASVH GLVGSAQKSA YVAAKHGVIG FTKVTALENA TTGVTCNAIC
PGWVLTPLVQ KQVDARAAHD GVDIAEATRR LLGEKQPSMQ FTTPEELGEL AVFLCSPAGN
NVRGVAWNVD GGWTAQ