Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1897 |
Symbol | |
ID | 6159831 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 2053592 |
End bp | 2054362 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641664659 |
Product | 3-hydroxybutyrate dehydrogenase |
Protein accession | YP_001790929 |
Protein GI | 171058580 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01963] 3-hydroxybutyrate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0333934 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAAGG GCAAGACCGC TCTGGTCACC GGTTCCACCA GCGGCATCGG ACTGGGCGTG GCACTCAGCC TCGCACGTCA AGGCGCCAAC GTGATCCTCA ACGGCTTCGG TGACGCCAGC GGCCCGCAGG CCGAGGTGGC CGCACTCGGC GTCAAGGTGG GTTACCACGG CGCCGACATG AGCAAGCCGG CCGAGATCGA GGCCATGATG GCCTACGCGC AGGCCGAGTT CGGCGGCGTC GACATCCTCG TCAACAACGC CGGCATCCAG CACGTCGCGC CGGTGCAGGA CTTCCCGGTC GAGCGCTGGG ACGCGGTGAT CGCGATCAAC CTCAGCTCGA ACTTCCACAC CACCCGCCTC GCCCTGCCCG GCATGCAGGC GCGCAACTGG GGCCGCATCA TCAACATCGC GTCGGTGCAC GGCCTGGTGG GCTCGGCGCA GAAGTCGGCC TACGTGGCGG CCAAGCACGG CGTGATCGGC TTCACCAAGG TCACGGCACT CGAGAACGCC ACCACCGGCG TCACCTGCAA CGCCATCTGC CCGGGCTGGG TGCTGACGCC GCTGGTGCAG AAGCAGGTCG ATGCGCGCGC CGCGCACGAC GGTGTCGACA TCGCCGAAGC CACCCGTCGC CTGCTCGGCG AGAAGCAGCC GTCGATGCAG TTCACCACGC CCGAGGAACT CGGCGAACTC GCCGTCTTCC TGTGCTCGCC CGCCGGCAAC AACGTGCGCG GCGTGGCCTG GAACGTCGAC GGCGGCTGGA CGGCGCAGTA A
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Protein sequence | MLKGKTALVT GSTSGIGLGV ALSLARQGAN VILNGFGDAS GPQAEVAALG VKVGYHGADM SKPAEIEAMM AYAQAEFGGV DILVNNAGIQ HVAPVQDFPV ERWDAVIAIN LSSNFHTTRL ALPGMQARNW GRIINIASVH GLVGSAQKSA YVAAKHGVIG FTKVTALENA TTGVTCNAIC PGWVLTPLVQ KQVDARAAHD GVDIAEATRR LLGEKQPSMQ FTTPEELGEL AVFLCSPAGN NVRGVAWNVD GGWTAQ
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