Gene Lcho_1892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1892 
Symbol 
ID6160034 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2047534 
End bp2049000 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content72% 
IMG OID641664654 
Productvon Willebrand factor type A (vWA) domain-containing protein 
Protein accessionYP_001790924 
Protein GI171058575 
COG category[R] General function prediction only 
COG ID[COG2425] Uncharacterized protein containing a von Willebrand factor type A (vWA) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.141181 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCACCC TCGATGCGCC CTACGACCGG CTCGAAGCCC TGCCGCGTGA ACTCTGGCTG 
CCGGCGCTGA TCACCTCGGT GGGCGACTCG GCGCAGCGGC TGGCCGATCT GCGCGCCTGG
CTCGATGCGC TCGACGCCGG CCGCCTGCCC TCGCCCGAAC ACCACTTTGC CGACGACGAC
GCACTCGCGC CGATGCGCGC CGTGATCGGC ACGCTCGAAC TGCCCGGCCT GTGCAAGGGC
GTGCCGGCGC TGGCGCAGCA GGTGCTGCGC ACGCTGCTGT GGCATCTCGA CCGCATCGCC
GACCTGCAGC CCGCACTCGG CCGCACCGAG GCCATTGCGG CGGCCGCGCA GGGTTTCAGC
GCGGAATGGG CGCTCGAATC CACCGGCCTC GAAGAACAGC TCGCGCTGCT GCAGGACCTG
GGCGACGTCT CGCAGCTGCG CTGGGACGAA CTGCAAGGCC TGCTCAACTC GCGTGGATGG
CAAGAGGCGC AGCGCCTGAG CGCGCTGCTG GCGCACCTGC AGCCGCTGGT CGAGCTGATC
CGCGCGCTCG GCCGCACCGA ACACCAGCCG TCGGCGCCGC CGGCCGACAC CGCCGCGCCG
CAGGTGCAAT CGCTGCGCCG GCCGATGCGC GAGTGCGAAA CCCACCTGCC CGACGCGCCC
GGCGAGGTCA CCGGCATCCG CCAGTCCGAC CGCATCGACC GCATGCTGAG CGCCGAGGCG
GTGCAGATCC GCCACCCGGT GCTGCGCAAG CTCTGGCGCG CCCGGCTGGC CGAGGCGCGG
CTGCTGACCT ACGAAAGCGA GGCGGTGCTG ATCGAACACG CGCCCGATCC GCAGGCGCGG
CCGCAGTTGC AGTCGCAGCC GGTGGCCGCA CCGCTGGCGC GCGGGCCGAT CATCCTGTGC
CTGGACACCT CGGGCTCGAT GAAGGGTGCA CCCGAGAAGA TCGCCAAGGC GGTGGTGATC
GAGGCGCTGC GCACGGCGCA GCGCGAGCGG CGCGGCTGCA TGCTGGTGGC CTTCGGCGGC
CGTGGCGAGA TGCTCAGCCG CGAGCTGCAC GCCGGCGCCG CCGGCCTGCG GGCGCTGCTC
GATCTGATCG GCACCGGTTT CGACGGCGGC ACCGACGTGC AGACGCCGAT CGAACATGCC
GTCGAGCGGG TGCGCCAGGC GCGCTGGCGC AGCGCCGATC TGCTGATCGT CAGCGACGGC
GAATTCGGCT GCGTGCCGCA GACCCTGCTG CAGCTCGATC AGGCCAAGGC CGAACTCGGC
CTGCGGGTGC AGGGCATCCT GATCGGCGAC CGCGAAACCA TGGGTCTGCT CGAGACCTGC
GACCAGATCC ACTGGCTGCG CGACTGGCGC CGCTTCGAAG GCGAGCAGCC GCAGCGCGAG
GGCCACGTGC CGGTGCACAC GCCGAGCCTG ACCGCGCTCT ACTTTCCGAA CGCGCTCAGC
GAACGGGCAA GCCGCCACCG CAGCTGA
 
Protein sequence
MRTLDAPYDR LEALPRELWL PALITSVGDS AQRLADLRAW LDALDAGRLP SPEHHFADDD 
ALAPMRAVIG TLELPGLCKG VPALAQQVLR TLLWHLDRIA DLQPALGRTE AIAAAAQGFS
AEWALESTGL EEQLALLQDL GDVSQLRWDE LQGLLNSRGW QEAQRLSALL AHLQPLVELI
RALGRTEHQP SAPPADTAAP QVQSLRRPMR ECETHLPDAP GEVTGIRQSD RIDRMLSAEA
VQIRHPVLRK LWRARLAEAR LLTYESEAVL IEHAPDPQAR PQLQSQPVAA PLARGPIILC
LDTSGSMKGA PEKIAKAVVI EALRTAQRER RGCMLVAFGG RGEMLSRELH AGAAGLRALL
DLIGTGFDGG TDVQTPIEHA VERVRQARWR SADLLIVSDG EFGCVPQTLL QLDQAKAELG
LRVQGILIGD RETMGLLETC DQIHWLRDWR RFEGEQPQRE GHVPVHTPSL TALYFPNALS
ERASRHRS