| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1891 |
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| Symbol | |
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| ID | 6160033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2044959 |
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| End bp | 2047487 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641664653 |
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| Product | glycogen/starch/alpha-glucan phosphorylase |
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| Protein accession | YP_001790923 |
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| Protein GI | 171058574 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0058] Glucan phosphorylase |
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| TIGRFAM ID | [TIGR02093] glycogen/starch/alpha-glucan phosphorylases |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.391259 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCTGA CCCAGTTCGA ACACCAGTAC GACCACCTGG CCCGCGACGT GGCCTCCTTC
AAGCGCGCCA TCTCGAACAA GCTGGTCTAC AGCGTCGGCA AGGATCCCGT CTCGGCGCGT
CCTGAAGACT GGCTGCACGC GGTGTCGTAC GCGGTGCGCG ACCACCTGGT CGAGCGCTGG
ATGAAGACCA CCCGCGCCCA GTACGCGCAG GACGTCAAGC GGGTCTACTA CCTGTCGATG
GAGTTCCTGA TCGGGCGCAC CTTCAGCAAC GCGCTGCTGG CGCTCGAGCT GATGCCCACC
ATCCGGCAGG CGCTCGGCGA ACTCGACGTC GACGTCGACA AGCTGTTCGA CCTCGAACCC
GATGCCGCGC TCGGCAATGG CGGCCTGGGC CGGCTGGCGG CGTGTTTTCT GGATTCGATG
GCCACCATCG GCGTGCCCGG TTTCGGCTAC GGCATCCGCT ACGACTACGG CATGTTCCGC
CAGACCATCG TCGACGGCCG CCAGGTCGAG GTGCCCGACT ACTGGCTCAA CCAGGGCAAC
CCGTGGGAGT TTCCGCGCCC GGAGGTGCAT TACCGCGTGC GCTTCGGCGG CTACCTCGAG
ACCACCGGCC AGGGCGTCGA CAGCATCGTG CGCTGGGTCG GCACCGACGA CGTGCTGGCG
ATGGCCTACG ACACCATCAT CCCCGGCTAC GGCACCCAGG CCACCAACAC GCTGCGCCTG
TGGTCGGCCA AGGCGACCGA GGAGATGAAC CTCAAGGCCT TCAACCAGGG CAACTACTTC
GGCGCGGTGG AGGGCAAGAA CCACTCCGAG AACGTCTCGC GCGTGCTGTA CCCCGACGAC
TCGACGCTGT CGGGGCGCGA GCTGCGGCTG CGCCAGGAGT ATTTCTTCGT CTCGGCCAGC
CTGCAGGATC TGGTGCACCG CTACCTGCGC ACCCACACCG GCTTCGAGGC GCTGCCCGAC
AAGGTCAGCA TCCACCTCAA CGACACCCAC CCGGTGCTGG CGATTCCCGA GCTGATGCGC
ATCCTGGTCG ACGAGCACCG GGTGCCGTGG GCGCAGGCCT GGGCGTTGAG TCAGAAGGTG
TTCTCGTACA CCAACCACAC GCTGATGCAC GAGGCGCTCG AGACCTGGCC GGTCGACCTG
TTCGGCCGCG TGCTGCCGCG CCACCTGCGC ATCATCTTCG ACATCAACGC CGATTTCCTG
GCCGCGATCA CCAAGAAGAA CGGCCACCAG CCCGAGCTGA TGCGCAGGGT CTCGCTGATC
GACGAAAGCG GCGAGCGGCG CGTGCGCATG GCCTACCTGG CGGTGGTGGC GAGCCACTCG
ATCAACGGCG TGTCGGCGCT GCATTCCGAG CTGATGAAGG AGTCGATCTT TGCCGACTTC
GCCCGGCTCT GGCCCGAACG CTTCAACAAC AAGACCAACG GCGTGACGCC GCGGCGCTGG
CTGGCGCAGG CCAACCCGGG CCTGGCCGCG CTGATCGACC AGCGCGTGGG CCGCGGCTGG
CGGCGTCACC TGGATGACCT CGAAGGCCTG CGCCACTCGC TCGACCTGCC CGGTTTTCTC
GGCGCCTTCC GCAAGGTCAA GCGCCAGAAC AAGGAGCGCC TGGCGCGCTA CGTGCTCAAG
CACATGGGCG TGACGCTCAA CCCCGACGCG CTGTTCGACG TGCAGGTCAA GCGCATCCAC
GAATACAAGC GTCAGCTGCT CAACCTGCTG CACGTGGTCT CGCGCTACCG CGCGATCCTG
GCCAATCCCG ACGCGCAATG GGTGCCGCGG GTGGTGGTGT TCGCCGGCAA GGCGGCCTCG
GCCTATCACA TGGCCAAGCT GGTCATCAAG CTGATCAACG ACGTGGCCCG CACGGTCAAC
AACGACCCGC GCGTGGGCGA CCGGCTCAAG GTGGTGTTCA TCCCCAACTA CAGCGTCAGC
CTGGCCGAGA TCATCATCCC GGCGGCCGAC CTGTCCGAGC AGATCTCCAC CGCCGGCACC
GAGGCCTCGG GCACCGGCAA CATGAAGTTC GCCCTCAACG GCGCGCTGAC GATCGGCACG
ATGGACGGCG CCAACGTCGA GATCCACCAG CAGGTCGGCG CCGACAACAT CTTCATCTTC
GGCAACACCA CGCCCGAGGT GGCCGAGATC CGTGCCCGCG GCTACCAGCC GCGCGCCCTC
TACGAAGGCA ACGCCGAACT CAAGGCCACG CTCGACGCGA TCCGCGACGG CCTGTTCAGC
CCCGACGAAC CCGGCCGCTT CCAGCAGATC TACGACGTGC TGGTGAACTG GGGCGACCAC
TACCTGCTGC TGGCCGACTA CGCCAGCTAC GTGGCGGCGC AGGCCGATGT CGACATGCTC
TACCGCAACC CCGACGCCTG GGCGCGCAAG GCGGTGCTCA ACGTGGCGGG CATGGGCGTG
TTCTCGTCCG ACCGCACGAT CGCCGAATAC GCCGACCAGA TCTGGCACAG CCGCCCGGTG
GTGCTGCCGC TGCCGCACAC GGTGCAGCTG GCGGTCGAGG CCAGCGCCGC CGTCTCCAGC
GGAAGCTGA
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| Protein sequence | MDLTQFEHQY DHLARDVASF KRAISNKLVY SVGKDPVSAR PEDWLHAVSY AVRDHLVERW
MKTTRAQYAQ DVKRVYYLSM EFLIGRTFSN ALLALELMPT IRQALGELDV DVDKLFDLEP
DAALGNGGLG RLAACFLDSM ATIGVPGFGY GIRYDYGMFR QTIVDGRQVE VPDYWLNQGN
PWEFPRPEVH YRVRFGGYLE TTGQGVDSIV RWVGTDDVLA MAYDTIIPGY GTQATNTLRL
WSAKATEEMN LKAFNQGNYF GAVEGKNHSE NVSRVLYPDD STLSGRELRL RQEYFFVSAS
LQDLVHRYLR THTGFEALPD KVSIHLNDTH PVLAIPELMR ILVDEHRVPW AQAWALSQKV
FSYTNHTLMH EALETWPVDL FGRVLPRHLR IIFDINADFL AAITKKNGHQ PELMRRVSLI
DESGERRVRM AYLAVVASHS INGVSALHSE LMKESIFADF ARLWPERFNN KTNGVTPRRW
LAQANPGLAA LIDQRVGRGW RRHLDDLEGL RHSLDLPGFL GAFRKVKRQN KERLARYVLK
HMGVTLNPDA LFDVQVKRIH EYKRQLLNLL HVVSRYRAIL ANPDAQWVPR VVVFAGKAAS
AYHMAKLVIK LINDVARTVN NDPRVGDRLK VVFIPNYSVS LAEIIIPAAD LSEQISTAGT
EASGTGNMKF ALNGALTIGT MDGANVEIHQ QVGADNIFIF GNTTPEVAEI RARGYQPRAL
YEGNAELKAT LDAIRDGLFS PDEPGRFQQI YDVLVNWGDH YLLLADYASY VAAQADVDML
YRNPDAWARK AVLNVAGMGV FSSDRTIAEY ADQIWHSRPV VLPLPHTVQL AVEASAAVSS
GS
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