Gene Lcho_1889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1889 
Symbol 
ID6159916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp2042098 
End bp2043366 
Gene Length1269 bp 
Protein Length422 aa 
Translation table11 
GC content67% 
IMG OID641664651 
Productglucose-1-phosphate adenylyltransferase 
Protein accessionYP_001790921 
Protein GI171058572 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0448] ADP-glucose pyrophosphorylase 
TIGRFAM ID[TIGR02091] glucose-1-phosphate adenylyltransferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.350932 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACATCA CCCGCATTGC CCAGGCCCGC AGCCTGACCC GCCGCTCACT CGCCCTGGTG 
CTGGCCGGCG GCCGCGGTTC GCGCCTGAAG GACCTGACCG ATCGGCGCGC CAAGCCGGCG
GTGCACTTCG GGGGCAAGTT CCGCATCATC GACTTCGCGC TGTCGAACTG CATGAACTCG
GGCATCCGCC GCATCGGCGT GATCACGCAG TACAAGTCGC ACTCGCTGCT GCGCCACCTG
CAGCGCGGCT GGAGCTTCCT GCGCAACGAG ATGGGCGAGT TCGTCGACCT GCTGCCCGCG
CAGCAGCGTG TCAACGAGGA AAGCTGGTAC CAGGGCACCG CCGACGCCAT CTACCAGAAC
CTCGACATCA TCCGCAACTC GACGCCGCCC GACTACATCG TCGTGCTGGC CGGCGACCAC
ATCTACAAGA TGGACTACTC GATCATGCTG GCCGACCACG CCGCCAGCGG TCGGGGCGTG
ACGGTGGGCT GCATCGAGGT CTCGCGCGAT GAAGCCAAGG CGTTCGGCGT GATGGCGATC
GACGACGAGC GCCACGTCAC CGCCTTCGTC GAGAAGCCGG CCGATCCGCC GGCCATGCCG
GGCCATCCGG ACAAGTCGCT CGCCAGCATG GGCATCTACG TCTTCTCGGC CGACTACCTG
TATCGCCTGC TCGAAGACGA CGCCGCCGAT CCGACCTCGG AACACGATTT CGGCAAGAAC
CTGATCCCGC GTGCGGTGGC CGAGAACCAG GCGCTCGCGC ATCCGTTCTC GATGTCGGCG
ATCCCCAATC CGCTGTTCGA GGGCTCCTAC TGGCGCGACG TCGGCACGGT CGACGCCTAC
TGGGCCGCCA ACCTCGACCT GGCTTCGCCC ACGCCCGAGC TGAACATGTA CGACAAGGAA
TGGCCGATCT GGACCTACCA GGAACAGCTG CCGCCGGCCA AGTTCGTGCA CGACTACGAC
GGCCGCCGTG GCGAGGCGAT CAACTCGCTG GTGTCGGGCG GCTGCATCGT CTCGGGCTCG
ACGGTGCGCA ACTCGGTGCT GTTCTCCAAC GTGCTGGTGC GCTCGTACAG CGAGATCAAC
CAGACGGTGA TGCTGCCCGA CGTGCAGATC GGCCGCGGCT GCCGGCTCAG CAAGGTGGTG
ATCGACCGCC GCTGCCACCT GCCCGACGGC CTGGTGATCG GCGAGGACGC CGAGCTCGAC
GCCAAGCGGT TCTTCCGCAC CGAAAACGGC GTGGTGCTGG TGACACGCCG CATGCTCGCC
GCGCTGTGA
 
Protein sequence
MDITRIAQAR SLTRRSLALV LAGGRGSRLK DLTDRRAKPA VHFGGKFRII DFALSNCMNS 
GIRRIGVITQ YKSHSLLRHL QRGWSFLRNE MGEFVDLLPA QQRVNEESWY QGTADAIYQN
LDIIRNSTPP DYIVVLAGDH IYKMDYSIML ADHAASGRGV TVGCIEVSRD EAKAFGVMAI
DDERHVTAFV EKPADPPAMP GHPDKSLASM GIYVFSADYL YRLLEDDAAD PTSEHDFGKN
LIPRAVAENQ ALAHPFSMSA IPNPLFEGSY WRDVGTVDAY WAANLDLASP TPELNMYDKE
WPIWTYQEQL PPAKFVHDYD GRRGEAINSL VSGGCIVSGS TVRNSVLFSN VLVRSYSEIN
QTVMLPDVQI GRGCRLSKVV IDRRCHLPDG LVIGEDAELD AKRFFRTENG VVLVTRRMLA
AL