Gene Lcho_1885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1885 
Symbol 
ID6159912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2035048 
End bp2035479 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content71% 
IMG OID641664647 
Producthypothetical protein 
Protein accessionYP_001790917 
Protein GI171058568 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1585] Membrane protein implicated in regulation of membrane protease activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.0298787 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGAAC CGATGCTCTG GTGGCTTGCC GCCGCGATCC TGGTGGCCGC CGAACTGGCC 
ACCGGCACCT TCTATCTGCT GATGCTCAGC CTGGGCCTGG CCGCCGGTGC GCTGGCCGCT 
CATGCAGGCC TCGACACCCC GGCGCAACTG CTGTGTGCCG CGCTGGCCGG CGGTGGCGCG 
GTGGCGTTCT GGCATCTGCG CCGCCAGAGC CGACCACCCA CCGCACCGCA GTCCGAGAAC 
CCCGAGCTCA ACCTCGACAT CGGCCAGCGG GTTCACGTCA CGCACTGGCG CGCCGACGGC 
AGCGCGCGCG TGAGCTACCG CGGCAGCACC TGGACCGCGC GCCTGCATCA GCCGTCGTCC 
ACGGATGCGG TGCCAACCGG CGACTACCGC ATCCGCGCCG TCGACGGCAA CACCTTGCTG 
CTCGAACGCT GA
 
Protein sequence
MSEPMLWWLA AAILVAAELA TGTFYLLMLS LGLAAGALAA HAGLDTPAQL LCAALAGGGA 
VAFWHLRRQS RPPTAPQSEN PELNLDIGQR VHVTHWRADG SARVSYRGST WTARLHQPSS 
TDAVPTGDYR IRAVDGNTLL LER