| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1832 |
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| Symbol | |
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| ID | 6161320 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 1981014 |
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| End bp | 1982738 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641664594 |
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| Product | general substrate transporter |
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| Protein accession | YP_001790864 |
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| Protein GI | 171058515 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.357144 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGTT TCGCAGACAC CACCCAGGAC GATTCCAGCA GCCCGATGAC CTCCGAGGAG
CGCAAGCTCA TCTTCGCGTC GTCGTTGGGT ACCGTGTTCG AGTGGTACGA CTTCTACCTC
TACGGTTCGC TGGCGGCCAT CATCGCCAAG CAGTTCTTCG CCGGCCTGGA CCCGACCTCG
GCGTTCATCT TCGCGCTGCT GGCGTTTGCG GCCGGCTTCA TCGTGCGGCC GTTCGGTGCC
CTGTTCTTCG GCCGGCTCGG CGACATGATC GGGCGCAAGT ACACCTTCCT GGTGACGATC
CTGATCATGG GCGCGTCGAC CTTCATCGTC GGCGTCCTGC CCAGCTACGC GTCGATCGGC
GTCGCCGCTC CGGTGATCCT GATCATCCTG CGGCTGCTGC AGGGCCTGGC GCTCGGTGGC
GAGTACGGTG GCGCGGCCAC CTACGTGGCC GAACACTCGC CGCAAGGCAA GCGCGGCGCC
TACACCGCCT GGATCCAGAC CACGGCGACG CTCGGGCTGT TCATGTCGCT GATCGTCATC
CTGACCATGC GCACGGTGGT GGGCGAGGCG GCGTTCGAGG ACTGGGGCTG GCGCGTGCCG
TTCGTGCTGT CGATCGTGCT GCTGGGCATC TCGGTGTGGA TCCGCCTGTC GATGCAGGAG
TCGCCCGCGT TCCTGAAGAT GCAGGCCGAG GGCAAGATCT CCAAGGCGCC GCTGTCCGAG
TGCTTCGGCG AGTGGAAGAA CCTGCGCATC ATCGTGCTGG CCCTGTTCGG CGTGGTGGCC
GGGCAGGCGG TGGTCTGGTA CACGGGCCAG TTCTACGCGC TGTTCTTCCT GACCAGCGTG
CTCAAGGTCG AGCCGTCCAC GGCCAACGTG CTGGTGGCGA TCGCGCTGCT GATCGGCACG
CCGTTCTTCG TCATCTTCGG CACCGTCTCC GATCGCATCG GCCGCAAGCC GATCATCATG
GCCGGCCTGC TGCTGGCGGT CGTCACCTAC TTCCCGCTCT TCAAGGCGCT GACGCAGGCG
GCCAATCCGG ATCTGGCACG GGCCCAGGCC TCGGCGCAGA TCGTCGTCAA GGCGGACCCG
GCGACCTGCT CGTTCCAGGG CAGTCCGATC GCCCGCGAGA TCGACTTCAC GTCGGCCTGC
GATCTGGCCA AGCGTGCGCT GGCGCAAAGC TCGGCCAGCT ACAGCAACGA AGCGCTGCCG
GCCGGCGGCG AGACCGTGAT CCTGATCGCC GACAAGCCCG TCGCCGTGCC CACCGGCCAG
CTGGTGGCCG AAGGCAACCG CTTCACGCCC GAGAGCGCGC AGTCGATCTC CGCCTTCCGC
AAGGAGCTGG CGGCGGCGAT GACGGCGGCC GGATATCCCG ACCGCGCCGA CCCCGCCAAG
ATCAACAAGC TGGAGATCGT GCTGATCCTG CTGGTGCTGG TGATCTACGT GACGATGGTC
TACGGCCCGA TCGCGGCGAT GCTGGTGGAG ATGTTCCCGA CCCGCATCCG CTACACCTCG
ATGAGCCTGC CGTACCACGT CGGCAACGGC TGGTTCGGCG GCCTGATGCC GACCATCGCG
TTCGCGATGG TGGCGCAGAA CGGCAACATC TATCACGGCC TCTGGTACCC GATCGCGATC
GCGGGCATCA CCTTCGTGAT CGGCATGGTG TTCGTGCGCG AGACCAAGGA CGTCGACATC
TACGCCAAGT TCCTGTACTG GCACCCGAAC CGTCTGCGCA AGTGA
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| Protein sequence | MSGFADTTQD DSSSPMTSEE RKLIFASSLG TVFEWYDFYL YGSLAAIIAK QFFAGLDPTS
AFIFALLAFA AGFIVRPFGA LFFGRLGDMI GRKYTFLVTI LIMGASTFIV GVLPSYASIG
VAAPVILIIL RLLQGLALGG EYGGAATYVA EHSPQGKRGA YTAWIQTTAT LGLFMSLIVI
LTMRTVVGEA AFEDWGWRVP FVLSIVLLGI SVWIRLSMQE SPAFLKMQAE GKISKAPLSE
CFGEWKNLRI IVLALFGVVA GQAVVWYTGQ FYALFFLTSV LKVEPSTANV LVAIALLIGT
PFFVIFGTVS DRIGRKPIIM AGLLLAVVTY FPLFKALTQA ANPDLARAQA SAQIVVKADP
ATCSFQGSPI AREIDFTSAC DLAKRALAQS SASYSNEALP AGGETVILIA DKPVAVPTGQ
LVAEGNRFTP ESAQSISAFR KELAAAMTAA GYPDRADPAK INKLEIVLIL LVLVIYVTMV
YGPIAAMLVE MFPTRIRYTS MSLPYHVGNG WFGGLMPTIA FAMVAQNGNI YHGLWYPIAI
AGITFVIGMV FVRETKDVDI YAKFLYWHPN RLRK
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