| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1826 |
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| Symbol | |
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| ID | 6163933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1974550 |
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| End bp | 1976721 |
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| Gene Length | 2172 bp |
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| Protein Length | 723 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664588 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001790858 |
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| Protein GI | 171058509 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0185611 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCAG CTTCGACCTC CTGTTTCACC TCGCGTCCTT CGGCGCTGGC AGCGGCCTGC
CTGTGCGCGC TCGCCGCCCT TGCTGCGCCG GCATCGGCGC AAGTCGGCGC CGGCCTCGAG
CCGGTGATCA TCACCGGCAG CACCCGCGAG CAGAAGCTGG TCGACGCGCC CTACGCCATC
AACGCGGTCG GCGCCGAGGC GCTGCGCAGC GCCGGGCCGA TGGTCAACCT GTCGGAGGCG
CTGGCCTCGG TGCCCGGCCT GGTGGTGGCC AACCGCAACA ACTACGCGCA GGACCTGCAG
ATCAGCTCGC GCGGCTTCGG CGCCCGCGCC GGTTTCGGCG TGCGCGGCAT GCGGCTGTAC
GCCGACGGCA TCCCCGCCAC CATGCCCGAC GGCCAAGGCC AGGTGGCGCA TTTCGACCTC
GCCGGCGCGG ATCGCGTCGA GGTGCTGCGC GGGCCGTTTT CGGCGCTGTA CGGCAACAGC
TCGGGCGGCG TGATCGCGGC CTATTCGAAG CCGGTGCGCG AGCGCAACTT CCAGGTCGGC
ATCGACGCCG GCAGCTTCGG CCTGCGCCAG CAGCGGGTGT CGGTCGAGTC GCCGTTCGAC
GGCGGTTTTT CGATCGCCGC CAACTTCAGC AATTTCGACA TCGACGGCTT TCGCCCGAAC
AGCGATGCCG ACCGCCGGCT GGCCAACATC CGCCTGGCCT GGGTCGGCGA GGACGACCAC
GTCACGCTCG CGATCAGCGA CCAGCACCAG CGCGCCAACG ACCCGCTCGG CCTGAACCGC
GCTCTGTTCA GCCAGAACCC CGACCAGACG GCTCTCGCGG CGACCAACTT CAGGACCCGC
AAGACCATCG ACCAGACCCA GGCCGGCCTG AGCTGGCAGC ACCAGCTGGG CGGCGACAGC
GCCTTGCAGT CGACCCAGGT CAGCGGCTAC CTGGGTCGGC GTTCGGTGTT CCAGATGCTG
TCGACGCCGC GCGCGAACCA GCTGATCACC GCTGACCCAG GCAGTACCAC CCCGCCTAAC
CCGAACAGTG CCGGCGGCGT GATCGACTTC GACCGCGACT ACGCCGGCGT CGACGGACGT
CTGAGCTGGC GTCTAGGCGA GGCCGATCTG GTCACCGGCG TCAACGTCGA GCGCCTGCGC
GACGCCCGCA AGGGCTACGA GAACTACAGA AGCGCCACCG ATCTGGGCGT GGTCGGCGAC
CTGCGCCGCG ACGAGACCAA CCGCGCCACC ACCCGCGAGG CCTACGCCCA GCTCGAACAG
CCGCTGGCCG AGCAGTGGCA GCTGATCGCC GGCGTCCGCA CCGGTCAGGT CGAGCTGTCG
AACACCGACC ATTACGTCAA TCCGCCGACG AACCCGACCA ACCCGGACGA CAGCGGCTCG
CTGAGCTTCC GCTACACCAA CCCGGTGCTC GGCCTGCGCT GGCAGGCGGC CCCGACGCTG
ACGCTGCACG CCAGCGCCTC GCGCGGCTAC GAATCGCCCA CGCTGGGCGA AGTCGCCTAT
CGCCCGGACG GCGCCACCGG CTTCAACGAC ACCCTGCAGG CCCAGACCAG CCGCCAGATC
GAACTCGGCG CCAAGTGGCG GCCGACGCCC GACTACGCGA TCGACGCGGC GGTGTTCCGC
ATCAGCACCG ACAACGAGAT CGGCGTCAAC GCCAATGTCA ACGGCCGCGG CACCTTCAAG
AACGTCGGCC GGACGCTGCG GCAGGGGCTC GAGCTGTCGC AGCGCTGGCG TCACAGCCCG
ACGCTGCGCG GCCAACTCGC GCTGACCGTG CTGGACGCGA GCTACCGCAG CGCCCCCATC
GACGGCAACC AGATCGCCGG CACCCAGCCC GCCAGCCTGT TTGCCGAGAT CGCCTGGAAG
ACCTGGCCGG GCGGCGAATG GGGCCTGGAG GTGCGCGCCC AGGGCCGCAC CGCCTTGAAC
GATGCGAATC AGGACGCCCC CGGCACACCG GGCGGCGGCT TCGCGGCCGG CTGGGGCATC
GCGAACCTGC GTTATCTGCA CGCCTGGGAC ATCGGCAGCG AGGCCAAGGT CGAACTGCTG
GCGCGTGTCG ACAACCTGGC CGATCGCCGC TACGCCGGCA GCGTGATCGT GGCCGAGGCC
AACCAGCGCT ACTTCGAGAC GGCACCCGGG CGCAACCACC TCGTGTCGCT GCGCTATCTG
CGCAAGTTCT GA
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| Protein sequence | MTAASTSCFT SRPSALAAAC LCALAALAAP ASAQVGAGLE PVIITGSTRE QKLVDAPYAI
NAVGAEALRS AGPMVNLSEA LASVPGLVVA NRNNYAQDLQ ISSRGFGARA GFGVRGMRLY
ADGIPATMPD GQGQVAHFDL AGADRVEVLR GPFSALYGNS SGGVIAAYSK PVRERNFQVG
IDAGSFGLRQ QRVSVESPFD GGFSIAANFS NFDIDGFRPN SDADRRLANI RLAWVGEDDH
VTLAISDQHQ RANDPLGLNR ALFSQNPDQT ALAATNFRTR KTIDQTQAGL SWQHQLGGDS
ALQSTQVSGY LGRRSVFQML STPRANQLIT ADPGSTTPPN PNSAGGVIDF DRDYAGVDGR
LSWRLGEADL VTGVNVERLR DARKGYENYR SATDLGVVGD LRRDETNRAT TREAYAQLEQ
PLAEQWQLIA GVRTGQVELS NTDHYVNPPT NPTNPDDSGS LSFRYTNPVL GLRWQAAPTL
TLHASASRGY ESPTLGEVAY RPDGATGFND TLQAQTSRQI ELGAKWRPTP DYAIDAAVFR
ISTDNEIGVN ANVNGRGTFK NVGRTLRQGL ELSQRWRHSP TLRGQLALTV LDASYRSAPI
DGNQIAGTQP ASLFAEIAWK TWPGGEWGLE VRAQGRTALN DANQDAPGTP GGGFAAGWGI
ANLRYLHAWD IGSEAKVELL ARVDNLADRR YAGSVIVAEA NQRYFETAPG RNHLVSLRYL
RKF
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