Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1823 |
Symbol | |
ID | 6163857 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1969408 |
End bp | 1972617 |
Gene Length | 3210 bp |
Protein Length | 1069 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641664585 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001790855 |
Protein GI | 171058506 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.00515556 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTGACTT TGCTGGTGCG CCTGGTGGGC AGGCTCAGCG TCGGCCGCAA GCTGATGCTG ATCTATCTGC TCGACCTCAG CTCGGTGCTG TACGTGGCGG GCATCCTGAT CGACGAGAAG TTCATCGCCA TCGACTTCGC GCGCAAGGAA CTCGCCGGCA GCGCCTACGT GCGGGTCGTG GCCGATGCGC TGGTCGACGT GGCCGGTGCC GGGCAGCCGC CGTCGACGGC AGCGCCGGCG CTGCCGACGG CCACCCACCT GCAGCGCCTG GCCGAACAGG CCCGTGCGCA GGACGCCGGC ATGCGCAGCG CCGAGGTTTC GGCGCCGCTG GCCGACGCCA TCACGCGCTG GGCCGAACCC GCCGCAGGCC GGCCGCGGGC CACGGTCGAC GAGGTGCTGC GCCGCGGCCA GGACCTGCTG ACGCGGGTGG GCAACCAGTC GAACCTGATC CTCGACCCCG ATCTGGACAG CTACTACAGC ATGTCGATCG TGGTCCTGCG CCTGCCCGAG CTGCTGCAGG TGGTGCACGG CATCGCCCAC CACGCCGAAA CCGGGGTCGG CCGCGACGCA CGCAGCGTCT ACCTGGTGCT CGAAGGCCGG CTCGATGCGA TCGCGCAAGG GCTCGAGTCC GACCACGCCG AGGCCTTTGC GGCCGGCAGC CCGGCATTGA AGGCGGCGCT GTCGCCAGGC CATGCCGAGC TGAATCGGCG CATCGAGCAG TTCCGGCTGC AGTCGCGGGC CTGGGTCGAC GCCGGCATGG GCGTGCACGG CCAGGCGGCG ATGCGGGTGG CCGAGGGCGA ACTGCTGCGG GCCTTGAAGG CCTCGTGGCT CGACACCAGC CAGGCGCTCG ACGGCCTGCT GCTGCAGCGT GTCGACCGGC TCTATGCGCG CATGTGGCTG CACCTGGGCA CGGCGCTGTT CCTGCTGCTG TGCGTGCTGG CGGTGGTCAG CTTCGTGGCC GGCCAGATCG CCCGGCCGCT CAAGCGCCTG TCGACCGTGG CCGACACCGT GCGGCGCACC GGCGACCACG GCCAGCGCGT GGACTGGCAG AGCTCCGACG AGATCGGCCG GCTGGTCGAC GCCTTCCACG ACATGCTCAG CCAGCTCGAG ACCGAGCGCG ATCGCCAGAA GGAGATGGCC GCCCGCGAGC GCGCCGCCGA GGCCCAGCGC AGTCTGCTCG AGGCCATGCC GGTGCCGCTG ATGGTGACGG CGGTGCCCGG CCACGAGGTG CTGCACGCCA ACGCGCCGGC GCGGCTGTGG ATCGGCGAGC GGCTGGCCGA TCCGTGGGCG CTCGGGCTCG ATTCGCACGT GCGAGCGCGC TTTTTCCAGC AGTTGCAGGA CCGCGACGCG GTCGACGAGT TCGAGGTCCA CTGGCGCGGC CCGACCGAGG CCGTCTGGGC GGTGCTGTCG GCGCGGCGCA TCGTCTTCCA GGGGCGCGAC GCGGTGCTCA CCACGCTGGC GCCGATCAAC CACCTCAAGC AGCTCGAGCA GCGGCTCGAG CTCTGGGCCA AGGTGTTCGA GACCTCGTCG GAGGGCATCT TCATCGTCGA CGCCCAGCAG CGCATCCTGA CCGCCAACTG GGCGCTCACG CGCAGCACCG GCCACGACCT GATCGAGCTG ATGGGTGGCG ATCCGGCCGA ACTGCTGGCC GGCGCCGACG CCCGCCAGAC CTGGCAGTCG CTGGTCGAGC GGGTGCAGAC ACGCGGCAGC TGGCAGGGCG AGGTGCGTAT CTGCCGCCGC GCCGGTGGCG ACTACCCGGC CTGGCTGCTG GCCAACGCGG TGCGCGACCG CGCCGGCCAT GTCTCGCACT GGGTTTGCAC CTCGATCGAC ATCACCGACC GCAAGGAAAG CGAGCGGCGC ATCCGTTTCC TGGCCGAACA CGACGTGCTG ACCGAGCTGC CCAACCGCGC GCTGTGCATC GAGCGCCTGC GCCTGGCGCT GCAGCAGGCC CGGCGCACGG GGCAGAAGGT GGCCGTGCTG TTCATCGACC TCGACCGCTT CAAGAACATC AACGATTCGC TCGGCCACCA CGTCGGCGAC GGCCTGCTGC GCTCGGTGGC GCAGCGCCTG GTCGACGGCG TGCGCGCCGG CGACACCGTC AGCCGCCTGG GCGGTGACGA GTTCGTGGTG GTGCTCAACG GCCTGGCCGA CATCGAGGAG GTCGCGCACG TGGTCGAGCA GCGTCTGATC CCGCGCGTGC GCCAGCCGCA CGGCGTGCAG GGCGCGGAGA TCCACGTGTC GTGCAGCGTG GGCATCTCGG TCTTCCCGGA CGACGCCCAG GACATCGACG AGCTGATGCG CCAGGCCGAC GTGGCGATGT ACCAGGCCAA GGCGCAGGGC CGCAACGGCG CACAGTTCTT CACCGCCGAG ATGAACCAGC GCGCGCAGGC GCGCCTGATG GTCGAGAACC ACCTGCGCAG CGCCGTGGCG CAGGGCCAAC TGTCGCTGCA CTACCAGCCG CGCATCCATG TGGCCGACGG CCGGGTGGCG GGGGTCGAGG GGCTGCTGCG CTGGCACAGC CCGGAGCTGG GTCATGTGCC GCCGGACCGC TTCATCCCGG TGGCCGAGGA GACCGGCCTG ATCATCGAGA TCGGCGCCTG GGTGATCGAG GCCGCCTGCG CCCAGATCGA GCGCTGGCGC GGCCAGGGGC TGCAGGAGGT GGCGGTGTCG ATCAACCTGT CGGCGCTGCA ACTGCGCGAC CCCGGCCTGC TCGACGTGCT GCGCGCCAGC CTCGAACGCC ACGCCGTGCC GCCCGGTCAG CTCGAACTGG AGCTGACCGA GTCGATCCTG ATGGACCAGG TCGATGCCCA CCTGGTCACC TTGCACGCCT TGCGCGAACT GGGGCTGCGC CTGTCGATCG ATGATTTCGG CACCGGCTAT TCGAGCCTGA ACTACCTCAC GCGCTTCCCG ATCGACCAGC TCAAGATCGA CCGCTCCTTC GTGCGCGACA TGCTCGACGA CCCACGTGAC CTCGCCATCA TCAAGGCCAT CATCGGCCTG GGCCACACGC TGGGGTTGAA GGTGGTGGCC GAAGGCGTCG AGCGCGAACT CGAGGTGCAG GCGCTGCGCG CAGCCGGCTG CGACGAGCTG CAGGGTTACC ACTTTGCCCG GCCGATGGCG GCCGACACCG CCACCGCCTG GCTGCTGGAC TGGATCCGCC GCCAGGCGGC CGTGCGTGGC GGCAACTTGC CGGCCGAGTT TCCGGTCTGA
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Protein sequence | MLTLLVRLVG RLSVGRKLML IYLLDLSSVL YVAGILIDEK FIAIDFARKE LAGSAYVRVV ADALVDVAGA GQPPSTAAPA LPTATHLQRL AEQARAQDAG MRSAEVSAPL ADAITRWAEP AAGRPRATVD EVLRRGQDLL TRVGNQSNLI LDPDLDSYYS MSIVVLRLPE LLQVVHGIAH HAETGVGRDA RSVYLVLEGR LDAIAQGLES DHAEAFAAGS PALKAALSPG HAELNRRIEQ FRLQSRAWVD AGMGVHGQAA MRVAEGELLR ALKASWLDTS QALDGLLLQR VDRLYARMWL HLGTALFLLL CVLAVVSFVA GQIARPLKRL STVADTVRRT GDHGQRVDWQ SSDEIGRLVD AFHDMLSQLE TERDRQKEMA ARERAAEAQR SLLEAMPVPL MVTAVPGHEV LHANAPARLW IGERLADPWA LGLDSHVRAR FFQQLQDRDA VDEFEVHWRG PTEAVWAVLS ARRIVFQGRD AVLTTLAPIN HLKQLEQRLE LWAKVFETSS EGIFIVDAQQ RILTANWALT RSTGHDLIEL MGGDPAELLA GADARQTWQS LVERVQTRGS WQGEVRICRR AGGDYPAWLL ANAVRDRAGH VSHWVCTSID ITDRKESERR IRFLAEHDVL TELPNRALCI ERLRLALQQA RRTGQKVAVL FIDLDRFKNI NDSLGHHVGD GLLRSVAQRL VDGVRAGDTV SRLGGDEFVV VLNGLADIEE VAHVVEQRLI PRVRQPHGVQ GAEIHVSCSV GISVFPDDAQ DIDELMRQAD VAMYQAKAQG RNGAQFFTAE MNQRAQARLM VENHLRSAVA QGQLSLHYQP RIHVADGRVA GVEGLLRWHS PELGHVPPDR FIPVAEETGL IIEIGAWVIE AACAQIERWR GQGLQEVAVS INLSALQLRD PGLLDVLRAS LERHAVPPGQ LELELTESIL MDQVDAHLVT LHALRELGLR LSIDDFGTGY SSLNYLTRFP IDQLKIDRSF VRDMLDDPRD LAIIKAIIGL GHTLGLKVVA EGVERELEVQ ALRAAGCDEL QGYHFARPMA ADTATAWLLD WIRRQAAVRG GNLPAEFPV
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