| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1818 |
|---|
| Symbol | |
|---|
| ID | 6161380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 1965646 |
|---|
| End bp | 1966926 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641664580 |
|---|
| Product | FAD-dependent pyridine nucleotide-disulphide oxidoreductase |
|---|
| Protein accession | YP_001790850 |
|---|
| Protein GI | 171058501 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1251] NAD(P)H-nitrite reductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00136959 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCATG TGATCCTGGG CGCAGGCCCG GCCGGCGTGA TCGCCGCTGA AACCATCCGC
AAGCACGCGC CGAACGACGA GATCATCGTG ATCGGCGACG AGCCCGAGGC GCCGTACTCG
CGCATGGCGA TCCCCTACCT GCTGATCGGC AAGGTGGGCG AGGAGGGCAC GCACCTGCGC
CATGGCGAGA ACCACTACGA AAAGCTCGGC ATCACGCTCA AGCGCGGCCG CGCCAGCAAG
GTGGACACCC AGGCGCGCCA GGTGCTGCTG GAGGACGGCA GCGCCGAATC CTTCGACAAG
CTGCTGATCG CCACCGGCTC GTCGCCGGCC ACGCCGCCGA TTCCCGGCAT CCAGGGCCCG
GGCGTGCATC CGTGCTGGAC GCTCGAAGAC GCCCGCGCCA TCGCCGCGCT GGCCCAGCCC
GGCGCGCGCG TGCTGCAGCT GGGCGCCGGC TTCATCGGCT GCATCATCAT GGAGGCGCTG
GCGATGCGCG GCGTCCAGCT CAGCGTGGTC GAGATGGGCG ACCGCATGGT GCCGCGCATG
ATGGGCCCGA CGGCGGGCGG CATGATCAAG GACTGGTGCG TCGCCAAGGG CGTGTCGGTC
CATACCGGCG CCCGCGTCGA GGCGATCGAC CGGCCCGATG CATCGGCTGC AGCGGGCTGC
GCGCCGATGT CGGTGCGCCT GTCCACCGGC GAACGCCTCG ATGCCGATCT GGTCATCAGC
GCCACCGGCG TGCGGCCCAA CATCGGCTTC CTCGAGAACT CCGGAATCAT CTGCCTGGTC
GGCGTGCTGA CCGACGAGCA CCTGCAGACC AACGTGCCAG GCATCTACGC CGCGGGCGAC
TGCGCCGAGG CCTTCGACAA GGTCAGCGGC ACCACCATCG TCAGCGCCAT CCAGCCCAAC
GCGGCCGAGC AGGCGCGGGT GGCGGCGCTC AACATGGTCG GCAAGACCAT CGAGCTCAAG
GGCGTGACGC AGATCAACGT GCTCGACACG CTGGGCATGA TCTCGGCCAG CTTCGGCAAG
TGGGACGGTG TGCCCGGTGG CCAGCATGTC GAGCTGACCG ACCGCGAGGC CGGCCGCCAC
CTGAGCCTGC AGTTCAGCGG TGATCAGCTG GTGGGCTGCA ACTCGATCGG CTGGACGAAT
CACGTCGGCG TGATGCGCGG CCTGGTCGAA GGCCAGGTGC GTCTGGGCGA GTGGAAGGAC
AAGCTGCTCG AAGACCCGAC CCTGCTGATG GCCGCCTACC TGGCCAGCGC GCAGGCCCAG
CATGAACACG CCCATGTCTG A
|
|---|
| Protein sequence | MKHVILGAGP AGVIAAETIR KHAPNDEIIV IGDEPEAPYS RMAIPYLLIG KVGEEGTHLR
HGENHYEKLG ITLKRGRASK VDTQARQVLL EDGSAESFDK LLIATGSSPA TPPIPGIQGP
GVHPCWTLED ARAIAALAQP GARVLQLGAG FIGCIIMEAL AMRGVQLSVV EMGDRMVPRM
MGPTAGGMIK DWCVAKGVSV HTGARVEAID RPDASAAAGC APMSVRLSTG ERLDADLVIS
ATGVRPNIGF LENSGIICLV GVLTDEHLQT NVPGIYAAGD CAEAFDKVSG TTIVSAIQPN
AAEQARVAAL NMVGKTIELK GVTQINVLDT LGMISASFGK WDGVPGGQHV ELTDREAGRH
LSLQFSGDQL VGCNSIGWTN HVGVMRGLVE GQVRLGEWKD KLLEDPTLLM AAYLASAQAQ
HEHAHV
|
|---|
| |