| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1811 |
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| Symbol | |
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| ID | 6162463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1957286 |
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| End bp | 1959034 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641664573 |
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| Product | methanol/ethanol family PQQ-dependent dehydrogenase |
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| Protein accession | YP_001790843 |
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| Protein GI | 171058494 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000177841 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGTTTGA AGATGCTCAG CTTGCTGGTG ACCGCCAGTC TGGCCACGAT GGCCGCCCAA
GCCGCCACCC CCGCCGTGAC CGACAAGATG ATCGAGAACG ACGCCAAGTC CACCGGCGAC
GTGCTCTCGT GGGGCATGGG CACCCAGGGC CAGCGCTATT CGCCGCTCAA GCAGATCAAC
ACCAGCACCG TCGCCAAGCT GGTGCCGGCC TGGAGCTTCT CGTTCGGTGG TGAAAAGCAG
CGCGGCCAGG AATCGCAGCC GGTCATCCAC AACGGCAAGA TGTTCGTCAC GGGTTCGTAC
TCGCGGATCT TCGCGCTCGA CGCCAAGACC GGCGCCAAGC TCTGGAAGTA CGAGCACCGC
CTGCCCGACG GCATCATGCC CTGCTGCGAC GTGATCAACC GCGGCGCCGC GCTGTATGAC
AACCTCGTGA TCTTCATGAC GCTCGATGCC CAGATCGTCG CGCTGAACCA GGACACCGGC
GAAGTGGTCT GGAAGGAAAA GATCGACAAC TACGCCGACG GCTACTCGGC CTCGGCCGCG
CCGCTGATCG CCGAAGGCCT GCTGCTGACC GGCGTCTCCG GTGGCGAGTT CGGCGTGGTC
GGCCGCGTCG AAGCGCGCGA TCCCAAGACC GGCGCGCTGG TCTGGACCCG CCCGACGGTC
GAAGGCCACA TGGGCTACAA GTACGACAAG GACGGCAACA AGACCGAGAA CGGCATCTCC
GGCACCACCG GCAAGAGCTG GCCGGGCGAC CTCTGGAAGA CCGGCGGCGC CGCCACCTGG
CTGGGTGGCA GCTACGACTC GCGCACCGGC CTGGCCTACT TCGGCACCGG CAACCCGGCA
CCCTGGAACA GCCACCTGCG CAAGGGCGAC AACCTGTTCA GCTGCTCGAC GCTGGCCATC
GACGTCAAGA CCGGCCAGAT CAAGTGGCAC TACCAGACCA CGCCGAACGA CGGCTGGGAC
TTCGACGGCG TCAACGAACT CATCACGTAC GACGACGGCG GCAAGGTCCT CGGCGGCAAG
GCCGACCGCA ACGGCTTCTT CTATGTGCTC GATGCCAAGA GCGGCAAGCT GGAAAACGCC
TTCCCCTTCG TCAAGAAGAT CACCTGGGCC ACCGGCATCG ACCTGAAGAC CGGCCGTCCG
AACTTCGTGC CGGAAAACCG TCCGGGCGAT CCGACCGCCA GCGCCGACGG CAAGAAGGGC
ACCTCGACCT TCGCCGCACC GTCGTTCCTG GGTGGCAAGA ACCAGATGCC GATGGCCTAC
AGCCCGGACA CCAAGCTGTT CTACGTGCCC GCCAACGAAT GGGGCATGGA GATCTGGAAC
GAGCCGATCA CCTACAAGAA GGGCGGCGCC TACCTGGGCG CGGGCTTCAC GATCAAGACG
CTCAACGACG GCCCCATCGG CGCGATGCGC GCGATCGACC CGAAGACCGG CAAGATCGTC
TGGGAAGCAC CGAACAACGC GCCGCTGTGG GGCGGCGTGC TGACCACCGG TGGCAACCTG
GTGTTCTGGG GCACGCCGGA AGGCTATCTG CAAGCCGCTG ACGCCAAGAC CGGCAAGATC
GTCTGGAAGT TCCAGACCGG TTCCGGCGTG GTGGCGCCCC CGGTGACCTG GAGCGAAGGT
GGCGAGCAGT ACGTCGCCGT GGCTTCGGGC TGGGGTGGCG CGGTGCCGCT GTGGGGCGGC
GACGTGGCCA AGAAGGTCAA CTACCTCGAG CAGGGTGGCT CGGTGTGGGT GTTCAAGCTG
ATGAAGTGA
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| Protein sequence | MRLKMLSLLV TASLATMAAQ AATPAVTDKM IENDAKSTGD VLSWGMGTQG QRYSPLKQIN
TSTVAKLVPA WSFSFGGEKQ RGQESQPVIH NGKMFVTGSY SRIFALDAKT GAKLWKYEHR
LPDGIMPCCD VINRGAALYD NLVIFMTLDA QIVALNQDTG EVVWKEKIDN YADGYSASAA
PLIAEGLLLT GVSGGEFGVV GRVEARDPKT GALVWTRPTV EGHMGYKYDK DGNKTENGIS
GTTGKSWPGD LWKTGGAATW LGGSYDSRTG LAYFGTGNPA PWNSHLRKGD NLFSCSTLAI
DVKTGQIKWH YQTTPNDGWD FDGVNELITY DDGGKVLGGK ADRNGFFYVL DAKSGKLENA
FPFVKKITWA TGIDLKTGRP NFVPENRPGD PTASADGKKG TSTFAAPSFL GGKNQMPMAY
SPDTKLFYVP ANEWGMEIWN EPITYKKGGA YLGAGFTIKT LNDGPIGAMR AIDPKTGKIV
WEAPNNAPLW GGVLTTGGNL VFWGTPEGYL QAADAKTGKI VWKFQTGSGV VAPPVTWSEG
GEQYVAVASG WGGAVPLWGG DVAKKVNYLE QGGSVWVFKL MK
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