| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1808 |
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| Symbol | |
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| ID | 6162460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1953435 |
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| End bp | 1954937 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664570 |
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| Product | TIR protein |
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| Protein accession | YP_001790840 |
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| Protein GI | 171058491 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.000000211372 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCAAGC GCGTTTTCAT CAGCTACAAG CGCAACACCG CGCTCGATCA ACCGCTGGCG
CACCGGCTGT ACGACAGCCT CGGCAAGGCC GGCCACGAGG TGTTCCTCGA CGCCGAGATC
CTGCTCGGTG AAGACTGGGT GATGCGCATC CAGCGCGAGG TGGAGGCGGC CGATTTCCTG
ATCCTGCTGC TGTCGGAGCA CTCGATCGAG AGCCAGATGG TGGCCGAGGA GGTGCGGCTG
GCCGAACATG CCCGCAAGAG CAGCGGCAAG CCGTCGATCC TGCCGGTGCG GGTGGTCTAC
GAGGGCAGCC TGCCCTACGA CCTGGGCGCC ATCCTCAACC GGCTCAACTA CGCGCTCTGG
CGCAGCCCGG CCGACGACGA CGAACTGCTG GTGCAGCTGT CGGCGGCCAT CGGCGGCGAT
GCCCTGCCCG CCCCGGTGCT GGCCGGCGGC GAGCTGCCCT GCGACCGGCC GATGCCCGCG
GCCAACCCGC GCGCGGTGCT GGAGCTGCCC GAGCAGGTGC TCGAGGCGGC GTCACCTTTC
TACATCGAGC GCGACGGCGA CCGCGTGCTG GCCGCCGAGC AGACCCAGCC GGGCTACACG
CTGACGATCC AGGCGGCGCG CCAGACCGGC AAGAGCTCGA TGCTCGGGCG GGTGCTCGAA
CGCGGCGTGC AGGCGGGCAA GAAGGCGGCG TTCATCGATT TCCAGGGCTT CGAGGACGCG
GTGCTGAACG ACCCGGCGCA GCTCTACTAC CAGTTCGCCT TCAGCATCGA GGACGCCCTG
CAGCTCGAAC CGCAACTCGA CAAGTACTGG GGCGTGCCGC TGGGCGCGAC GCAGAAATGC
GGCCGCTTCA TGGAGCGCCG CATCCTGCCG GCCTGCGGCG ACGCCGGCCT GCTGCTGCTG
CTCGACGACG CCGACGAGTT GCTGGCGTCG GGCGCGAGCA TGGACTTCTT CGGCATGCTG
CGCAGCTGGC ACGGCAGCCG CGCCCGCCCG GGGCCGTGGA AGAACTTCGC GCTGGCGATG
GCGATCTCGA CCGAACCGGC GCTGCTGATC GCCGACCTGG CGCAGTCGCC GTTCAACGTC
GGCACGCCGG TCAAGCTGGC CGACTTCGAG CTGGCCGACA CCGAAAAGAT CAACCAGAGC
CACGACGCGC ACCTGAGCCG GCCGCAGCTG GAGACGCTCT ACCAGCTGCT GGGCGGCCAC
CCCTACCTGA CGCGCAAGGC CTTCTACCTG ATCGGCACCG GCCGTTCGAG CTTCGACACC
CTGATCGCCG ATGCCTGCTC GGAGACCGGC CCGTTCGGCG ACCACCTGCG CGCGCTGCTG
ACGCGGCTGA TTCTCAAGGC CGATCTCGGC TCGGCGATCC GCTCGGCACT GTCGGGCGAC
CGGCTCGACG GCCGTGCGCG CGAGCGGCTG ATCGCCGGCG GGCTGTTCGT CGAACAAGAC
GGGCGGCTGG TCGCGCGCAA CCAGCTCTAC GACCGCTACC TGCGCCGGGC GCTGCATGAC
TGA
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| Protein sequence | MSKRVFISYK RNTALDQPLA HRLYDSLGKA GHEVFLDAEI LLGEDWVMRI QREVEAADFL
ILLLSEHSIE SQMVAEEVRL AEHARKSSGK PSILPVRVVY EGSLPYDLGA ILNRLNYALW
RSPADDDELL VQLSAAIGGD ALPAPVLAGG ELPCDRPMPA ANPRAVLELP EQVLEAASPF
YIERDGDRVL AAEQTQPGYT LTIQAARQTG KSSMLGRVLE RGVQAGKKAA FIDFQGFEDA
VLNDPAQLYY QFAFSIEDAL QLEPQLDKYW GVPLGATQKC GRFMERRILP ACGDAGLLLL
LDDADELLAS GASMDFFGML RSWHGSRARP GPWKNFALAM AISTEPALLI ADLAQSPFNV
GTPVKLADFE LADTEKINQS HDAHLSRPQL ETLYQLLGGH PYLTRKAFYL IGTGRSSFDT
LIADACSETG PFGDHLRALL TRLILKADLG SAIRSALSGD RLDGRARERL IAGGLFVEQD
GRLVARNQLY DRYLRRALHD
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