| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1807 |
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| Symbol | |
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| ID | 6162459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1949798 |
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| End bp | 1953442 |
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| Gene Length | 3645 bp |
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| Protein Length | 1214 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641664569 |
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| Product | WD-40 repeat-containing protein |
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| Protein accession | YP_001790839 |
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| Protein GI | 171058490 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2319] FOG: WD40 repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00000135295 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTGAGG CCGTCGCGGC GGGTTTCCGC TTCGTCACCG GCGGCACGCT GGCGCCGGAC
AATCCGAGCT ACGTGCGCCG CGCCGCCGAC GACGAGCTGC TGCAGGCCTG CCTGGCGGGT
CGGTTCGCCT ACGTGCTGTC GTCGCGGCAG ATGGGCAAGT CGAGCCTGCT GGCGCGCACC
ATCGAGCAGC TGCGCGAGCG CGGCGTGACG GTGGCGATGG TCGACCTGAC CGCCATCGGC
ACCCAGGGCG TGACGCAGGA AACCTGGTAC GCGGGCGTGC TGGCCGAGGT CGAGCGGGCC
TGCATGCCGC AGACCGACCT GTTCGACTGG TGGGCCGAGG CCGCGCCGCA GCCGATCGTG
CAGCGTTTCA TCCGCTACCT GATCGAGGTG GTGCTGGCCG AGCTGAGCGG GCCGGTGGTG
ATCCTGATCG ACGAGATCGA CTCGACCCTC AAGCTCGATT TCACCGACGA CTTCTACGCC
GCCATCCGAC ACCTGCACAA CGCCCGCGCC GAGCAGCCGG CGCTGGCGCG GCTGTCGTTC
GTGCTGGCCG GCGTGGCCAC CCCCACCGAG CTGATCCGCG ACCCGGCACG CACGCCGTTC
AACATCGGCC AGCGCATCGA GCTGGCGGAT TTCAACGCCG CCGAGGCGCG CCAGCTGGTC
GAGCGCATCG GGCCCGGCGT GGCGGACACC GACGCCGCGC TGGCCGACGT GCTGCGCTGG
ACCGGCGGCC AGCCCTATCT GACGCAGCGG CTGTGTGCAC TGCTGGCCGC GGCGCCGGGT
GCGAACCCGC CATCCGCCGC CGAGCACGTG GACGGCGTGG TGGCAGGCGG GCTGCTGTCG
GACAGCGGCT GGGCGGATCC GCACTTCCAG TCGGTGGCGC GCTACATGAC GGAGTCGCCG
GCCGAGCTGA AGGCCGATCT GTTCGCCACC TACGCGCAGG TGCTGGCCGG GCGCCGCGTG
GCCAGCATCG ACGCCTCGCC GGTGCACAAC CGGCTGCGCC TGTGCGGCAT CGTCAAGCGG
GTGGACGAAC AGCTGGTGCT GCGCAACGGC GTCTACCGCG AGCTGTTCGG CCGGCCGTGG
CTGCGCAAGC ACCGCCCCAC CTTCTGGACC CCGGCCAACC GCATCTGGGC CGGCGCACTG
GCGGCCAGCC TGCTGGTGAC AGCCGGTTTT GCCGCGCTCT GGCTGCGCGC CGAGCAGGCC
ACCGCCGCCG CCCGGCAGGC GCGGGTCGAG GCCGATGCCG GCCGACAGCA GGCCGAACAG
GCGACCGAGC GGGCCAGGCG GGCCACCGCC GACGCGCAGG CTGCGACTCT GGCCGCCGAT
GCCGCCGCTG CAAACGATGC CGGCGACCCG GATCGCGCGC TGGCCCTGAC GCACCAGGCG
CTGGCGACGC GCGTGACGCC GGTGTCGCTG TGGGCGGCCT TTGCCGCGGC CGAACAGCAT
CAGGCGCTGG CCGCGCTGCT CGGCCACACC GACGTCGTCG ATCAGGTGGC GCTGAACCCC
GCCGGCACCT TGGCCGCCAC CGCCAGTCAC GACGGCAGCG TGCGGCTGTG GCACCTGCCC
GACGGCCGGC AGGCGGCCGA ACTGCGCGGC CATGCCGGCC CGGTGATCGC GGTGTCGTTC
AGCCCCGACG GCCAGCGCGT GCTGAGCGCC GGCCACGACC GCACGGCGCG CCTCTGGGAC
AGCCGGACCG GCGAGCCGCT GCTCACGCTG CAGGGCCACG GCGATCGCCT GATGGCTGCC
GCCTTCAGCC CCGACGGCAA CCTGATCGCC ACCGCCAGCC AGGACGGCGC CGCCCGCCTC
TGGCGCGGCA CCGACGGCCG GCTGCTGCAC GTACTCGAAG GCCACAAGCA CTGGGTGCGC
TGCCTCGCCT TCAGCCCCGA TGGTCGCCAG CTCGCCAGCG GCGGCAACGA CGGCGACGTG
CGCCTGTGGA ACGTGCGCAG CGGCCGGCTC GCCGCCCGCC TGGCCGGCCA CCGCGACTGG
ATCCGCAGCG TCGCCTTCAG CCCCGACGGC CGATCGCTGG TCAGCGCCAG CGACGACGCC
ACCGCCCGCA TCTGGTCGAC CCGCGACGCC CGGCCGCGGC AGGTGCTGCG CGGCCACGCC
ACCTCGGTGC GCAGCGCCGC GTTCGACGAC CGCGGCGCGC GTGTCGTGAC CGGCGGCGGC
GACGGCGCGG TGCGACTCTG GCGCAGCAGC GACGGCCGCC CGCAGCGCCG CTGGCAGCAC
CCGCGCGGCT GGATCAACGC GGTGCAGTTC GTCGGCAGCG ACCAGGTGCT GAGCAGCGAC
GATGCCGGCG TCACGCGGGT CAACCCGATC GCCCCCGACG GCCAGGTCCT GACCCTGCTC
GGCCATCGAC AGGCGGTGAC GGCGGTGGCG GTCGACAGCC GCACGATGTT GGCGCTGACC
GCCGGCAACG ACCGCAGCGC GCGGCTCTGG AGCCTGCGAC CGGGCTCGCT GCTGGCCCGG
TTGCGCCCCG GCCAGCGGGC CGTCAACGAC CTGGCGTGGA GCGCCGACGG CCAGCGCCTG
CTGCTGGCCG GTGAAGACGG CGTGGCGCAG ATCCACTCGC CCGGCCGGGC CGAGCCGGCG
ATCACGCTGC AGCTGGACAG CGGCGGCACG CCATCGGCCG CAGGCACGAA GACCCGCGCC
AGCGCGGCAC CCGGCCCGTC CCGGCCACCC CCCGAGATCA CGGCCGTCGC GCTGAGTGCC
GACGGCCGAT GGGCGGCCGT CGCCCGCAAG GCCGATGCGG ACGACGGCCT GTCGACGGTG
CAAGGGTTCG ACGCCCGCAC CGGCGAGCGG CGGCCGCTTG CCGGCCCCGG TCACCGGGCC
ACCGTGAACA TGGTGGCGTT CAGCCCGGAC GGCCAATGGC TGGTCTCGGC CGGCGACGAC
GACCAGGCGC TGCTCTGGCG CGCCGGCGGA TCGGCCCCGC CGATCGCGCT GCGCGGGCAC
CAGGGCGCGG TCAACTCGGC CGTCTTCAGC GCCGACAACC GCCGGGTGCT GACCGCCAGC
GCCGACGGCA GCGCCCGGAT CTGGTCGCTG CCCGACGGCC GGCTGGTCCG GCCGCTGGCG
CACAGCCGCG ATGGCGAACG GCTGCGCATG GCCAGCTTCA GCGCCGACGG GCGGCTCGCG
GCCACGGCGG GCGACGACCA GCGCGTGCGC ATCTGGCAGG TCGACACCGG CGCCTTGCTG
CGCACGCTCG AGGGCCACGA CGACATCGTG ATGAGCGCGC ACTTCAGCCC GGACGGCCAC
CGGCTCGTCA GCGCCAGCCA GGACCGCAGC GCGCGGGTCT GGGACGTGGC CAGCGGCAAG
GCGCTGTTCA CCCTGCCGGC CGGCCGAACC GACATCGCCC GGCTGGCGAT CTACAGCGCC
GACGGCCGCC TGATCGTCAC CACCAGCGAC GACGGCCACG CCCGGCTCTG GCGCGCCGCA
GACGGCGCCG CAGTCGGCGA GTACGCGCAT GCCGACTGGA TCTGGAACGC CGCCTTCAGC
CCGGACGGCC AGCGCCTGGC CACCGCCAGC GAAGACGGCA GCGCCGCCAT CTGGGATCTG
GGCCGCAGCG CAGCCGATCC GGCGCGGCTG TCGGCCTGGA TGGCGCAACG GCTGGAACGC
CTGCAACGGC CGGCCGCGGC ACCACCGAGC CCCGCAGAAC GCTGA
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| Protein sequence | MTEAVAAGFR FVTGGTLAPD NPSYVRRAAD DELLQACLAG RFAYVLSSRQ MGKSSLLART
IEQLRERGVT VAMVDLTAIG TQGVTQETWY AGVLAEVERA CMPQTDLFDW WAEAAPQPIV
QRFIRYLIEV VLAELSGPVV ILIDEIDSTL KLDFTDDFYA AIRHLHNARA EQPALARLSF
VLAGVATPTE LIRDPARTPF NIGQRIELAD FNAAEARQLV ERIGPGVADT DAALADVLRW
TGGQPYLTQR LCALLAAAPG ANPPSAAEHV DGVVAGGLLS DSGWADPHFQ SVARYMTESP
AELKADLFAT YAQVLAGRRV ASIDASPVHN RLRLCGIVKR VDEQLVLRNG VYRELFGRPW
LRKHRPTFWT PANRIWAGAL AASLLVTAGF AALWLRAEQA TAAARQARVE ADAGRQQAEQ
ATERARRATA DAQAATLAAD AAAANDAGDP DRALALTHQA LATRVTPVSL WAAFAAAEQH
QALAALLGHT DVVDQVALNP AGTLAATASH DGSVRLWHLP DGRQAAELRG HAGPVIAVSF
SPDGQRVLSA GHDRTARLWD SRTGEPLLTL QGHGDRLMAA AFSPDGNLIA TASQDGAARL
WRGTDGRLLH VLEGHKHWVR CLAFSPDGRQ LASGGNDGDV RLWNVRSGRL AARLAGHRDW
IRSVAFSPDG RSLVSASDDA TARIWSTRDA RPRQVLRGHA TSVRSAAFDD RGARVVTGGG
DGAVRLWRSS DGRPQRRWQH PRGWINAVQF VGSDQVLSSD DAGVTRVNPI APDGQVLTLL
GHRQAVTAVA VDSRTMLALT AGNDRSARLW SLRPGSLLAR LRPGQRAVND LAWSADGQRL
LLAGEDGVAQ IHSPGRAEPA ITLQLDSGGT PSAAGTKTRA SAAPGPSRPP PEITAVALSA
DGRWAAVARK ADADDGLSTV QGFDARTGER RPLAGPGHRA TVNMVAFSPD GQWLVSAGDD
DQALLWRAGG SAPPIALRGH QGAVNSAVFS ADNRRVLTAS ADGSARIWSL PDGRLVRPLA
HSRDGERLRM ASFSADGRLA ATAGDDQRVR IWQVDTGALL RTLEGHDDIV MSAHFSPDGH
RLVSASQDRS ARVWDVASGK ALFTLPAGRT DIARLAIYSA DGRLIVTTSD DGHARLWRAA
DGAAVGEYAH ADWIWNAAFS PDGQRLATAS EDGSAAIWDL GRSAADPARL SAWMAQRLER
LQRPAAAPPS PAER
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