Gene Lcho_1797 details

Gene Information

• Locus tag: Lcho_1797
• ID: 6160832
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 1940759
• End bp: 1941517
• Gene Length: 759 bp
• Protein Length: 252 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 641664559
• Product: hypothetical protein
• Protein accession: YP_001790829
• Protein GI: 171058480

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 13
• Fosmid unclonability p-value: 0.00000108529
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGTGGCCC GCCCGGCGCC GGGGGCTGAC GCCATGAAGA TCTGGTCGAT GCTGCGGGCG 
TGTTCCCGCG TCGAGGCGGG CTTGCCGGCC GATTTCCGCC CCGATGTCGG GCTCGGCGGC 
GGCGACATCG CCGCGCTCGC CCAGCGCCTG TTCTGGGCCT GGGCGCTGAT GGCCGGCGTG 
GCGCTGTTCG GTGCCTGGTG GATGCAGCGC CACGGCTGGT GGCGGGCGCT GGTCGACGGC 
GATCCGAGCG GCATCAGCGT GGTGATCGCG GTGCTGGCGG TGGTCGTTAC CGGCTGGTGC 
GGCCTGCGCG CCTGGCGGCT GCAGGGCGAA TCGCGGCCCG GCGCCGGCCA CTGGCGCGCC 
GCCTATCTCG CCGATCTGCG TGCCGGCCAC GATCACGCCA GCGCGCTGCT GTCCGAGCGC 
ACCCACGGCC CGCACGAAAC CGCCTGGTGG TTTGCCGCCG CGGCGATCAA GCTCGGGCTG 
CTCGGCACGG TGGTCGGCTT CATCCTGATG TCGTCGCAGC TGGGCAAGAG CCAGAGCTTC 
GAGCTGGCCG AGGTGCAGCA GCTGCTGCAG CTGATGACCG GCGGCATGGC GATCGCGCTC 
TACACCACGC TGGTCGGGCT GGTGGCCAAC CTGTGGCTGG GGCTGCAACT GCTGCTGCTC 
GACCGCCTGG CCGACCGGCT GGCGGCCGAC ATCCTGGCTG ATGGCACCAC GGTCCGCGCC 
GCAGCGGCCG TGCGGCCGGC AGGCGCGGGA GCCCTCTGA 

 

Protein sequence

MVARPAPGAD AMKIWSMLRA CSRVEAGLPA DFRPDVGLGG GDIAALAQRL FWAWALMAGV 
ALFGAWWMQR HGWWRALVDG DPSGISVVIA VLAVVVTGWC GLRAWRLQGE SRPGAGHWRA 
AYLADLRAGH DHASALLSER THGPHETAWW FAAAAIKLGL LGTVVGFILM SSQLGKSQSF 
ELAEVQQLLQ LMTGGMAIAL YTTLVGLVAN LWLGLQLLLL DRLADRLAAD ILADGTTVRA 
AAAVRPAGAG AL