Gene Lcho_1776 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1776 
Symbol 
ID6162930 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1912149 
End bp1916033 
Gene Length3885 bp 
Protein Length1294 aa 
Translation table11 
GC content75% 
IMG OID641664538 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_001790808 
Protein GI171058459 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00000148654 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGTGACG ATTCGGGCTC CGGGCCCACC CCAGGCCTGC TGATCCTGCA CGGCAACCGC 
CTCGAGCTGC TGCTCGAGAC CGTCCTCCAG TGGCTCGCCG CCCACCCGCT GGCGCCGCTC
GAAGAAGAGG TGCTGCTGGT GCAGAGCAAC GGCATCGCCG AGTGGCTGAA GATGTCGCTG
GCGCAGCGCG TGGGCGTCTG CGCCGCCACC CGGGTCGAGC TGCCGGCGCG CTTCCTGTGG
CGCTGCTACC GCGCGATGCT CGGCCGAGCC GGCGCGCCGG CCCGCTCGCC GCTCGACAAG
GGGCCGCTCG CCTGGCGCCT GATGCGCGTG CTGCCCGCAC TGGCCGGGCG GCCGGGCTTC
GAGCCGCTGG CGCAGTTCCT GGCCGGGCCG GGCGGGCCGA CGCCGGATGC CGCCCCCGAC
CTGCCGCGCC GCCTGCAGCT CGCGCAGCGG CTGGCCGACC TCTACGACCA GTACCAGGTC
TACCGGGCCG ACTGGCTGAT CGACTGGGCC GCCGGCCGTG CCGTGCTCAC CAACCCCTGC
ACCGGCGCGG CGCCGGTGGC GCTCGATGCC GAGCAGCGCT GGCAGGCGCT GCTGTGGCAG
GCGCTGATCC GTGACCTCGG CACGACCGAC GCCGATCAGC CCGCCGACGC ACCGGCCGAG
TCCGCTGCCC TGGCCGTGCT GGCCGGCACC CGCCCGGCCG TGCACGCCCG CTTCGTCGCC
GCGCTCGCGC AGGACGAGGC GCCGCAGCGA CCGCTGCCGC GCCGCGTCGT GCTGTTCGGC
CACAGCCACC TGCCGGCACA GACGCTCGAG GCACTGGCCG CCCTGGCCGG CCACACCCAG
GTGATCCTGG CGGTGCCCAA CCCCTGCCGG TTCCACTGGG CCGACATGAT CGACGGCCGC
GAGCTGCTGC GCAGCGCGCA CCGCCGCCAG CCGCTGCGCA ACGGCCGCGA CCTGGGCGCG
CTCGACATCG CCGACGCCCA CGCCGAGGCC CATCCGCTGC TCGCCGCCTG GGGCCGGCAG
GGGCGCGATT TCCTGCGCCT GCTCGATGCC TTCGAGGAAC AGCTCGGCGG CGCCGAGGCC
GGTGCCCTGC GCGGCGAGCT GCCGCGGGTC GACCTGTTCG ACGACGAACC CGGCGACACG
CTGCTCGCGC AGGTACAGGC GCGCATCCGC GACGCCGTGC CGCTGGCCGA ACACGCCGCG
CTGAACGGCC CGCCGCTCGA TGCCGCCGCC GCCCGCCAGC GCGCCGCGAC CGACCGCTCG
ATCGAATTCC ACCTCTGCCA CAGCGCGATG CGCGAGGTCG AGGTACTGCA CGACCAGCTG
CTGGCGCGCC TGGCCGCGGC CAAGGGCTCG CTGGCGCCGC GCGACATCGT CGTGATGGTG
CCCGACGTCG AGGTCTACGC GCCGCTGGTG CGCGCCGTGT TCGGCCAGTA CCCGGCCAGC
GACGCCCGCC ACATCCCGTA CGACATCGCC GACCTGCGCC CGCGCGGCCA TCACCCGCTG
CTGCTGGCGC TCGAATGGCT GCTGCGCATC ACCGAGCAGC GCTGCACCGC CAGCGAGCTG
CGCGAGCTGA TCGACGTGGC GGCGCTGGCG AACCGTTTCG GCCTCGAAGG CGACGACCTG
CCCACGCTCG GCCGCTGGCT CGACGGCGCC GGCGTGCGCT GGGGACTCGA CGCCGAACAC
CGCGCCAGCC TCGACCTGGC CGCCTGCGGC GAGGCCAACA CCTGGGCGTT CGGCCTGCGC
CGCATGCTGC TCGGTTATGC GGTCGGCGAC GACCCGGCCG CCACGCCCGG TGAGCCGTGG
CACGGCATCG CGCCGTATGC GGAGGTCGGC GGCCTCGAGG CCTCGATCGC CGGTGCGCTG
GCCGAGCTGG TCGAGGCGCT GCAACGCTGG TGGCGCGAGG CCCGCACCGC CGCCACGCCG
GCTGATTGGG ACGCCCGCGC CCGCGCGCTG CTGGCTGCCT TCTTCCGCCC CGCCACCGAA
GACGAGCGCC TGCTGCTCGC GGCCCTGCAC GACGCGCTGG CGCAATGGCG CGAGGCCTGC
GACGAAGCCG GCTACGCCGA AGCCGTGCCG CTGGCGGTGC TGCGCGAGGC CTGGCTCGGC
ACGGTCGACG AGCCCGGCCT GCGCAGCCGC TTCCTGGCCG GCGGCGTCAC CTTCTGCACC
CTGATGCCGA TGCGCGCGAT CCCGTTCCAG GGCGTCTGCC TGCTCGGCAT GAACGAGGGC
GACTATCCGC GCCGCGGCGT GCGCAGCGAT TTCGACCTGC TCGCCGCGCC CGGCCAGCGC
CGCCCCGGCG ACCGCGCCCG CCGCGACGAC GACCGCATGC TGATGCTCGA GGCGCTGCTG
AGCGCGCGCG CGCAGCTGCA CGTCAGCTGG ATCGGCCGCA GCGTGCGCGA CAACACCGCG
CAGCCGCCCT CGGTGCTGGT GGCGCAGCTG CGCGACTACC TCGCCGCCGG CTGGGGCCGT
CCGCTGGTGG ACGCGCTGAG CGTCGAACAC CCGCTGCAGC CGTTCAGCCG GCGGTATTTC
GAGCAGACCG TCGAGCAGGG CGAGCCGGTC GACGGCCCCG CCGACGAAAC GGGCGACGAA
ACGGGCAACG ACACCGCCGC CCTGCGCCGC GGCCTGCTGA CCTACGCCCG CGAGTGGCGC
GCCGCCCATG CGCGCGAAGA CGCTGCCGCT GCGGCGTCCG ACCCCCTGAC AGCCGCGCCG
ACCCCGATCG ACCGCCGTCC CGCACCGGCC GACCAGCCGC CGCTCAAGCT CGCGATGCTG
ACGCGCTTCC TGCGCAACCC GGTCGCCGAT CACCTGAACG AGCGCCTCGG CGTGCGCCTG
GCGCTGGCCG ACGAGGCCCT GGCCGACGAC GAGCCGCTGG GCCTGCACGC GCTCGACGAG
AGCATCCTGC TGCGCCGGCT GGTCGAGCAG GGCGACGTGC AGACGGCGCA GTTGCCAGCC
AGCGCGCCCG CAGCCGATCC CGAGTCGGAC GCCGATGCCG CGCGGCTGCA GCGCGCGCTG
CAGGACGGCA GCCTGTCGCT GCAGCGCCAG GGCATCCTGC CGCTGGCCGG GCTGGGCGAG
CGCTGGCAGC AGGCCTTCGT GCGCCAGAGC CTGCCGATGC TGGCGCAGTG GCGGATCTGG
CAGGAGGCTG CGCCCGAACG CGCCGCGCCG CAGCCGCTCA ACCTGGCCCT GCCGCTCGCC
GACGGCGGCG CACTGCAGAT CGACGACTGG CTCGACGGCC TGCAGATCGA GGCCACCACC
GGCGCTCTGC TGTGGCTCGA CCTGCAGGCC AGCCGGCTGT GTGCCAAACC GGGCAAGAAG
GATCAGGGCA AGGGCAAGGC CGGCCCGGTG CGGCCCGACA AGCTCTACCG CGCCTGGCTG
GTGATGCTGG CGGCGGGTGC GGCTGGCATC GCGCTGACCG GCCGCATCGT CGGCCGTGAC
GTCACGCTGG AACTGAGCCC GCCGCCGGCC GAAGTGGCCC GCGCCGCGCT GGCCGACCTG
ACCGGCGCCT GGTGGGCCAG CTGGCGCGCG CCGCTGGCGA TCGCGCCCAG GTCGGCGCTG
GCGGCGCTGG CCGAGGCGCC GGTGCTGGCC GACGCCGATC CGTCCGGGCC ACGCCCCTGG
CCGCTCGACG CCTGGATCGC AGCCGAGCGC ACCTACGACG GCGGCACCTT CACCCGCCGC
GTGCCGCCCG AATCCGACGA GCCGTCGCTG GCCCGCGTCT TCGCCGACTG GGAGGCGCTC
GGTGCCCGCG CCGACGAGTT CCAGCACTGG GCCGAGCGCC TCTACCGCCC GCTGCGCGCG
TGGGCGCTGA ACACCGAGCG GGTGAAGGCG CAGCCGCTGC CGCAGGCGGT GCTGCTCGAC
GACGACGCCC AGGACGACGA ACGCGACGAC GGCGAGGACG CCTGA
 
Protein sequence
MRDDSGSGPT PGLLILHGNR LELLLETVLQ WLAAHPLAPL EEEVLLVQSN GIAEWLKMSL 
AQRVGVCAAT RVELPARFLW RCYRAMLGRA GAPARSPLDK GPLAWRLMRV LPALAGRPGF
EPLAQFLAGP GGPTPDAAPD LPRRLQLAQR LADLYDQYQV YRADWLIDWA AGRAVLTNPC
TGAAPVALDA EQRWQALLWQ ALIRDLGTTD ADQPADAPAE SAALAVLAGT RPAVHARFVA
ALAQDEAPQR PLPRRVVLFG HSHLPAQTLE ALAALAGHTQ VILAVPNPCR FHWADMIDGR
ELLRSAHRRQ PLRNGRDLGA LDIADAHAEA HPLLAAWGRQ GRDFLRLLDA FEEQLGGAEA
GALRGELPRV DLFDDEPGDT LLAQVQARIR DAVPLAEHAA LNGPPLDAAA ARQRAATDRS
IEFHLCHSAM REVEVLHDQL LARLAAAKGS LAPRDIVVMV PDVEVYAPLV RAVFGQYPAS
DARHIPYDIA DLRPRGHHPL LLALEWLLRI TEQRCTASEL RELIDVAALA NRFGLEGDDL
PTLGRWLDGA GVRWGLDAEH RASLDLAACG EANTWAFGLR RMLLGYAVGD DPAATPGEPW
HGIAPYAEVG GLEASIAGAL AELVEALQRW WREARTAATP ADWDARARAL LAAFFRPATE
DERLLLAALH DALAQWREAC DEAGYAEAVP LAVLREAWLG TVDEPGLRSR FLAGGVTFCT
LMPMRAIPFQ GVCLLGMNEG DYPRRGVRSD FDLLAAPGQR RPGDRARRDD DRMLMLEALL
SARAQLHVSW IGRSVRDNTA QPPSVLVAQL RDYLAAGWGR PLVDALSVEH PLQPFSRRYF
EQTVEQGEPV DGPADETGDE TGNDTAALRR GLLTYAREWR AAHAREDAAA AASDPLTAAP
TPIDRRPAPA DQPPLKLAML TRFLRNPVAD HLNERLGVRL ALADEALADD EPLGLHALDE
SILLRRLVEQ GDVQTAQLPA SAPAADPESD ADAARLQRAL QDGSLSLQRQ GILPLAGLGE
RWQQAFVRQS LPMLAQWRIW QEAAPERAAP QPLNLALPLA DGGALQIDDW LDGLQIEATT
GALLWLDLQA SRLCAKPGKK DQGKGKAGPV RPDKLYRAWL VMLAAGAAGI ALTGRIVGRD
VTLELSPPPA EVARAALADL TGAWWASWRA PLAIAPRSAL AALAEAPVLA DADPSGPRPW
PLDAWIAAER TYDGGTFTRR VPPESDEPSL ARVFADWEAL GARADEFQHW AERLYRPLRA
WALNTERVKA QPLPQAVLLD DDAQDDERDD GEDA