Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1776 |
Symbol | |
ID | 6162930 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 1912149 |
End bp | 1916033 |
Gene Length | 3885 bp |
Protein Length | 1294 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 641664538 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_001790808 |
Protein GI | 171058459 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00000148654 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGTGACG ATTCGGGCTC CGGGCCCACC CCAGGCCTGC TGATCCTGCA CGGCAACCGC CTCGAGCTGC TGCTCGAGAC CGTCCTCCAG TGGCTCGCCG CCCACCCGCT GGCGCCGCTC GAAGAAGAGG TGCTGCTGGT GCAGAGCAAC GGCATCGCCG AGTGGCTGAA GATGTCGCTG GCGCAGCGCG TGGGCGTCTG CGCCGCCACC CGGGTCGAGC TGCCGGCGCG CTTCCTGTGG CGCTGCTACC GCGCGATGCT CGGCCGAGCC GGCGCGCCGG CCCGCTCGCC GCTCGACAAG GGGCCGCTCG CCTGGCGCCT GATGCGCGTG CTGCCCGCAC TGGCCGGGCG GCCGGGCTTC GAGCCGCTGG CGCAGTTCCT GGCCGGGCCG GGCGGGCCGA CGCCGGATGC CGCCCCCGAC CTGCCGCGCC GCCTGCAGCT CGCGCAGCGG CTGGCCGACC TCTACGACCA GTACCAGGTC TACCGGGCCG ACTGGCTGAT CGACTGGGCC GCCGGCCGTG CCGTGCTCAC CAACCCCTGC ACCGGCGCGG CGCCGGTGGC GCTCGATGCC GAGCAGCGCT GGCAGGCGCT GCTGTGGCAG GCGCTGATCC GTGACCTCGG CACGACCGAC GCCGATCAGC CCGCCGACGC ACCGGCCGAG TCCGCTGCCC TGGCCGTGCT GGCCGGCACC CGCCCGGCCG TGCACGCCCG CTTCGTCGCC GCGCTCGCGC AGGACGAGGC GCCGCAGCGA CCGCTGCCGC GCCGCGTCGT GCTGTTCGGC CACAGCCACC TGCCGGCACA GACGCTCGAG GCACTGGCCG CCCTGGCCGG CCACACCCAG GTGATCCTGG CGGTGCCCAA CCCCTGCCGG TTCCACTGGG CCGACATGAT CGACGGCCGC GAGCTGCTGC GCAGCGCGCA CCGCCGCCAG CCGCTGCGCA ACGGCCGCGA CCTGGGCGCG CTCGACATCG CCGACGCCCA CGCCGAGGCC CATCCGCTGC TCGCCGCCTG GGGCCGGCAG GGGCGCGATT TCCTGCGCCT GCTCGATGCC TTCGAGGAAC AGCTCGGCGG CGCCGAGGCC GGTGCCCTGC GCGGCGAGCT GCCGCGGGTC GACCTGTTCG ACGACGAACC CGGCGACACG CTGCTCGCGC AGGTACAGGC GCGCATCCGC GACGCCGTGC CGCTGGCCGA ACACGCCGCG CTGAACGGCC CGCCGCTCGA TGCCGCCGCC GCCCGCCAGC GCGCCGCGAC CGACCGCTCG ATCGAATTCC ACCTCTGCCA CAGCGCGATG CGCGAGGTCG AGGTACTGCA CGACCAGCTG CTGGCGCGCC TGGCCGCGGC CAAGGGCTCG CTGGCGCCGC GCGACATCGT CGTGATGGTG CCCGACGTCG AGGTCTACGC GCCGCTGGTG CGCGCCGTGT TCGGCCAGTA CCCGGCCAGC GACGCCCGCC ACATCCCGTA CGACATCGCC GACCTGCGCC CGCGCGGCCA TCACCCGCTG CTGCTGGCGC TCGAATGGCT GCTGCGCATC ACCGAGCAGC GCTGCACCGC CAGCGAGCTG CGCGAGCTGA TCGACGTGGC GGCGCTGGCG AACCGTTTCG GCCTCGAAGG CGACGACCTG CCCACGCTCG GCCGCTGGCT CGACGGCGCC GGCGTGCGCT GGGGACTCGA CGCCGAACAC CGCGCCAGCC TCGACCTGGC CGCCTGCGGC GAGGCCAACA CCTGGGCGTT CGGCCTGCGC CGCATGCTGC TCGGTTATGC GGTCGGCGAC GACCCGGCCG CCACGCCCGG TGAGCCGTGG CACGGCATCG CGCCGTATGC GGAGGTCGGC GGCCTCGAGG CCTCGATCGC CGGTGCGCTG GCCGAGCTGG TCGAGGCGCT GCAACGCTGG TGGCGCGAGG CCCGCACCGC CGCCACGCCG GCTGATTGGG ACGCCCGCGC CCGCGCGCTG CTGGCTGCCT TCTTCCGCCC CGCCACCGAA GACGAGCGCC TGCTGCTCGC GGCCCTGCAC GACGCGCTGG CGCAATGGCG CGAGGCCTGC GACGAAGCCG GCTACGCCGA AGCCGTGCCG CTGGCGGTGC TGCGCGAGGC CTGGCTCGGC ACGGTCGACG AGCCCGGCCT GCGCAGCCGC TTCCTGGCCG GCGGCGTCAC CTTCTGCACC CTGATGCCGA TGCGCGCGAT CCCGTTCCAG GGCGTCTGCC TGCTCGGCAT GAACGAGGGC GACTATCCGC GCCGCGGCGT GCGCAGCGAT TTCGACCTGC TCGCCGCGCC CGGCCAGCGC CGCCCCGGCG ACCGCGCCCG CCGCGACGAC GACCGCATGC TGATGCTCGA GGCGCTGCTG AGCGCGCGCG CGCAGCTGCA CGTCAGCTGG ATCGGCCGCA GCGTGCGCGA CAACACCGCG CAGCCGCCCT CGGTGCTGGT GGCGCAGCTG CGCGACTACC TCGCCGCCGG CTGGGGCCGT CCGCTGGTGG ACGCGCTGAG CGTCGAACAC CCGCTGCAGC CGTTCAGCCG GCGGTATTTC GAGCAGACCG TCGAGCAGGG CGAGCCGGTC GACGGCCCCG CCGACGAAAC GGGCGACGAA ACGGGCAACG ACACCGCCGC CCTGCGCCGC GGCCTGCTGA CCTACGCCCG CGAGTGGCGC GCCGCCCATG CGCGCGAAGA CGCTGCCGCT GCGGCGTCCG ACCCCCTGAC AGCCGCGCCG ACCCCGATCG ACCGCCGTCC CGCACCGGCC GACCAGCCGC CGCTCAAGCT CGCGATGCTG ACGCGCTTCC TGCGCAACCC GGTCGCCGAT CACCTGAACG AGCGCCTCGG CGTGCGCCTG GCGCTGGCCG ACGAGGCCCT GGCCGACGAC GAGCCGCTGG GCCTGCACGC GCTCGACGAG AGCATCCTGC TGCGCCGGCT GGTCGAGCAG GGCGACGTGC AGACGGCGCA GTTGCCAGCC AGCGCGCCCG CAGCCGATCC CGAGTCGGAC GCCGATGCCG CGCGGCTGCA GCGCGCGCTG CAGGACGGCA GCCTGTCGCT GCAGCGCCAG GGCATCCTGC CGCTGGCCGG GCTGGGCGAG CGCTGGCAGC AGGCCTTCGT GCGCCAGAGC CTGCCGATGC TGGCGCAGTG GCGGATCTGG CAGGAGGCTG CGCCCGAACG CGCCGCGCCG CAGCCGCTCA ACCTGGCCCT GCCGCTCGCC GACGGCGGCG CACTGCAGAT CGACGACTGG CTCGACGGCC TGCAGATCGA GGCCACCACC GGCGCTCTGC TGTGGCTCGA CCTGCAGGCC AGCCGGCTGT GTGCCAAACC GGGCAAGAAG GATCAGGGCA AGGGCAAGGC CGGCCCGGTG CGGCCCGACA AGCTCTACCG CGCCTGGCTG GTGATGCTGG CGGCGGGTGC GGCTGGCATC GCGCTGACCG GCCGCATCGT CGGCCGTGAC GTCACGCTGG AACTGAGCCC GCCGCCGGCC GAAGTGGCCC GCGCCGCGCT GGCCGACCTG ACCGGCGCCT GGTGGGCCAG CTGGCGCGCG CCGCTGGCGA TCGCGCCCAG GTCGGCGCTG GCGGCGCTGG CCGAGGCGCC GGTGCTGGCC GACGCCGATC CGTCCGGGCC ACGCCCCTGG CCGCTCGACG CCTGGATCGC AGCCGAGCGC ACCTACGACG GCGGCACCTT CACCCGCCGC GTGCCGCCCG AATCCGACGA GCCGTCGCTG GCCCGCGTCT TCGCCGACTG GGAGGCGCTC GGTGCCCGCG CCGACGAGTT CCAGCACTGG GCCGAGCGCC TCTACCGCCC GCTGCGCGCG TGGGCGCTGA ACACCGAGCG GGTGAAGGCG CAGCCGCTGC CGCAGGCGGT GCTGCTCGAC GACGACGCCC AGGACGACGA ACGCGACGAC GGCGAGGACG CCTGA
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Protein sequence | MRDDSGSGPT PGLLILHGNR LELLLETVLQ WLAAHPLAPL EEEVLLVQSN GIAEWLKMSL AQRVGVCAAT RVELPARFLW RCYRAMLGRA GAPARSPLDK GPLAWRLMRV LPALAGRPGF EPLAQFLAGP GGPTPDAAPD LPRRLQLAQR LADLYDQYQV YRADWLIDWA AGRAVLTNPC TGAAPVALDA EQRWQALLWQ ALIRDLGTTD ADQPADAPAE SAALAVLAGT RPAVHARFVA ALAQDEAPQR PLPRRVVLFG HSHLPAQTLE ALAALAGHTQ VILAVPNPCR FHWADMIDGR ELLRSAHRRQ PLRNGRDLGA LDIADAHAEA HPLLAAWGRQ GRDFLRLLDA FEEQLGGAEA GALRGELPRV DLFDDEPGDT LLAQVQARIR DAVPLAEHAA LNGPPLDAAA ARQRAATDRS IEFHLCHSAM REVEVLHDQL LARLAAAKGS LAPRDIVVMV PDVEVYAPLV RAVFGQYPAS DARHIPYDIA DLRPRGHHPL LLALEWLLRI TEQRCTASEL RELIDVAALA NRFGLEGDDL PTLGRWLDGA GVRWGLDAEH RASLDLAACG EANTWAFGLR RMLLGYAVGD DPAATPGEPW HGIAPYAEVG GLEASIAGAL AELVEALQRW WREARTAATP ADWDARARAL LAAFFRPATE DERLLLAALH DALAQWREAC DEAGYAEAVP LAVLREAWLG TVDEPGLRSR FLAGGVTFCT LMPMRAIPFQ GVCLLGMNEG DYPRRGVRSD FDLLAAPGQR RPGDRARRDD DRMLMLEALL SARAQLHVSW IGRSVRDNTA QPPSVLVAQL RDYLAAGWGR PLVDALSVEH PLQPFSRRYF EQTVEQGEPV DGPADETGDE TGNDTAALRR GLLTYAREWR AAHAREDAAA AASDPLTAAP TPIDRRPAPA DQPPLKLAML TRFLRNPVAD HLNERLGVRL ALADEALADD EPLGLHALDE SILLRRLVEQ GDVQTAQLPA SAPAADPESD ADAARLQRAL QDGSLSLQRQ GILPLAGLGE RWQQAFVRQS LPMLAQWRIW QEAAPERAAP QPLNLALPLA DGGALQIDDW LDGLQIEATT GALLWLDLQA SRLCAKPGKK DQGKGKAGPV RPDKLYRAWL VMLAAGAAGI ALTGRIVGRD VTLELSPPPA EVARAALADL TGAWWASWRA PLAIAPRSAL AALAEAPVLA DADPSGPRPW PLDAWIAAER TYDGGTFTRR VPPESDEPSL ARVFADWEAL GARADEFQHW AERLYRPLRA WALNTERVKA QPLPQAVLLD DDAQDDERDD GEDA
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