| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1769 |
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| Symbol | |
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| ID | 6163618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1903261 |
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| End bp | 1905339 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641664531 |
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| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
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| Protein accession | YP_001790801 |
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| Protein GI | 171058452 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0000694205 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCTCGA TTTCCAGCAA CCACCCGACC GACTGCGACA CCGCACTCTG CCGCGTGGCG
TTCAACCTCC TGCAGGAGGC GCAGATGCTG ATCCGCATCG ACATCGACAG CCGTCGGATC
AGCACCGTCA ACGAGTTGGT GACGCGTTGT TCAGGCCGCA GCCGGGACGT GCTGGTGGGG
GAGCCGATCG AGGCGCTGCT GCAGATCGGT CCGCAAGACA TCGAGCAGAT CGCCGCCACA
GTCGCCGGCG GCACCTCCTG CGTGCGCCAG TTGACACTGT TTGCCCACGA CGGCAGCCTG
CGCCTGCTGG AGGCTCGTTT TGCGGCCTTC ACCGATGCCG CCGGCAAGAT CGAGGGACTG
CTCATTGCGG CGCGCGACCG CACGAAGTCC GGGTGCGAAC TCGCCGAACT GCAGCACAAG
TACGCCGCCA TCGACCGGGC CCAGGCCGTG ATCGAGTTCG ATCTGCAGGG CCACGTCACC
CATGCCAACG AGAATTTCCT GACGTTGACC GGCTACACGC TCGACGAGAT CCGGGGCCAG
CACCACCGCC TGTTCGTGGA TGAAGTCGAG GCGCGGAGCC CCGCCTACCG CGCCTTCTGG
CAGACGCTCG GCCGTGGCGA GTTCGAGGGT GGCGAATACA AGCGCATCGC CAAGGGCCGG
CGCGAAGTCT GGCTGCGTGC CACCTACAAC CCGATCTTCG ACCTCAACGG CAAGCCGGTG
AAGGTGGTGA CGCACGCGCT CGACGTGACC GAATCGAAGC TGCGCAACGC CGAGTTCGAG
GGCAAGGTGC GAGCGGTCGA CCGCTCGCAG GCGGTGATCG AATTCGACCT CAAGGGCCAC
GTGCTCGCGG CCAACGAGAA CTTCCTGGCC TGGATGGGCT ACAGGGCCGA GGAGGTCGTC
GGCAAGCATC ACCGGATGTT CTGCGACACC GACTTTGCCC AGACCGACGC CTACGCGACC
TTCTGGGAAA AACTTCGGCA CGGCGATTTC CAGGGCGGCG AATACAAGCG CCTGGGCAAG
GACGGCCGGG AAATCTGGAT CCAGGCCACC TACAACCCGA TCATGGACCT GGACGGGCGG
GTGATGAAGA TCGTCAAGTT CGCCACCGAC GTGACGCAGG CCAAGCTGCG CAATGCCGAT
TTCGAGGGCA AGGTGAACGC CATCAGCCGC GTGCAGGCGG TGATCGAGTT CGATCTCGAA
GGGCATGTGC TGGCTGCCAA CGAAAACTTC CTGCGCACGA TGGGCTTCTC GCGGCGCGAG
GTGCTGGGCC AGCACCACAG CATGTTCTGC GACCACGACG ACATCGTTTC GCCCGACTAC
CGCGACTTCT GGCTGCGCCT GAGCAAGGGC GAGTTCATCA GCCAGCGCTT CAATCGGGTC
GGCAAGTACG GCCGCCGGGT GTCGCTGCAG GCCAGCTACA ACCCGATATT CGGACTCGAC
GGCCAGCCGG CGAAGGTGGT GAAGTACGCC TACGACATCA CCGAGCAGGT CGCGCTGGAG
CAGCGCGTGG CCCGAAAGAC CCACGAGATG TCGGAGTCGA TCGTCGGGCT GGCTGCGGCC
ATCAAGGACA TCTCGCTGAG CACCCAGTCG GCCGCCGAAC TGGCCCAGGA AACCCGGCAC
ACCGCACAGA CCGGCTTCGA TGCGCTCAAC AAGTCGATCG AGTCGATCGC GCTGATCCAG
AAGTCGTCAG GCGAGATCAC CGCGATCGTC AAGGTGATCG GCGACATCGC CAGCCAGACC
AACCTGCTGG CCTTCAACGC GGCGATCGAG GCGGCGCGCG CCGGCGAACA TGGCGTCGGC
TTCTCGGTGG TGGCCGGCGA GGTGCGCAAG CTGGCCGAGC GCGCCGGCGA CGCCGCGCGC
GAGATCAACA AGCTGATCGA CGAGTCGTCG AGCCGCGTGA ACCAGGGCTC GACGGTGTCG
CAGCAGGCCA GGGAGGCCTT CGAGCACATC GTCACGAGCG TGGGCAAGAC CAGCGCATCG
ATCAGCCGCA TCGCCGAGTC GACGCTGACT CAGCAGAACG TGTCGCAAGC CGTCCGCACG
CTGATCGGCG AGCTCACCCA CGAGCCGGCG CGTACCTGA
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| Protein sequence | MTSISSNHPT DCDTALCRVA FNLLQEAQML IRIDIDSRRI STVNELVTRC SGRSRDVLVG
EPIEALLQIG PQDIEQIAAT VAGGTSCVRQ LTLFAHDGSL RLLEARFAAF TDAAGKIEGL
LIAARDRTKS GCELAELQHK YAAIDRAQAV IEFDLQGHVT HANENFLTLT GYTLDEIRGQ
HHRLFVDEVE ARSPAYRAFW QTLGRGEFEG GEYKRIAKGR REVWLRATYN PIFDLNGKPV
KVVTHALDVT ESKLRNAEFE GKVRAVDRSQ AVIEFDLKGH VLAANENFLA WMGYRAEEVV
GKHHRMFCDT DFAQTDAYAT FWEKLRHGDF QGGEYKRLGK DGREIWIQAT YNPIMDLDGR
VMKIVKFATD VTQAKLRNAD FEGKVNAISR VQAVIEFDLE GHVLAANENF LRTMGFSRRE
VLGQHHSMFC DHDDIVSPDY RDFWLRLSKG EFISQRFNRV GKYGRRVSLQ ASYNPIFGLD
GQPAKVVKYA YDITEQVALE QRVARKTHEM SESIVGLAAA IKDISLSTQS AAELAQETRH
TAQTGFDALN KSIESIALIQ KSSGEITAIV KVIGDIASQT NLLAFNAAIE AARAGEHGVG
FSVVAGEVRK LAERAGDAAR EINKLIDESS SRVNQGSTVS QQAREAFEHI VTSVGKTSAS
ISRIAESTLT QQNVSQAVRT LIGELTHEPA RT
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