Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1761 |
Symbol | |
ID | 6162058 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1891389 |
End bp | 1893110 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641664523 |
Product | type I secretion system ATPase |
Protein accession | YP_001790793 |
Protein GI | 171058444 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.0106544 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCAC TTCTGCGCAC CGTCGCCGGC TTTTCGATGG CGATCAACCT GCTCTGGCTC GGCCCGGCGC TGTTCAGCCT GCAGGTGTTC GACCGCGTGC TGACCAGCCA GAGCCAGGAA ACGCTGCTGG TGCTGCTGCT CGGGCTGGCG ATCGCGCTGG TGCTGGTCGG CGCGCTCGAC TTCCTGCGCG GCCGGCTGCA GGGCGTGCTC GGCAACATCG TCAACGACGC GATGGCGCCC GAGATCGCCC GCCTCTCGCT GGCGGTGGCC GCGCGTCGCC AGGGCGCCTT CACCAACGAG GCGCTGCGCG ACGTCGGCCG GCTGCGCGCG CTGTTCTCGT CGCAAGGCCT GGTGGCGGTG ATGGACGCGC CCTGGGCGCT GATCTTCATC GCCGTGATCG CGGTGGCGAA CCTGTGGCTG GGGCTGGCCG CGCTGCTCAG CGCGGTGCTG ATGCTGGGCC TGGCCTATGC GAACGACCGC ATGACCAAGC AATCGATCGA GAAGCTGCAG AAGGACGCCG GCGCCAGCCA GCGCTTTCTC GACCAGGCCA TGGTCAACGC CGAGGTGGCG CAGGCGATGG GCATGGCCGA CGCGCTGGTC GGGCGCTGGA ACGCGCTCAG CGCCAAGGTC GCCGACCTGC AGGACCCGGT CGCGCAGCGC TCGGTGGCGA TGGCCTCGGC CACCCGCATC GCCCGTCAGC TGACGCAGGT GCTGATGACC GCGCTGGGCG CCTGGCTGGT GATCCGCGGC GAGGCCACGC CGGGCGTGCT GATCGCGTCG AACATGCTGC TGGGCCGCGC ACTGCAGCCG GTCGAACAGA TCGTCGGCAG CTGGAAGATC ATGGCCGAAG GGCGACTGGC CTGGCGCCGC CTCGATCCGC TGATGAGCGA GGCCTTCAAC CGCCGGCCGC AGATGGCGCT GCCGGCGCCG AACGGCCAGC TCAGCACGAC GGGGCTGGTG TTTCGCCCGC AGGGCAGCGA GCGCACGCTG CTGATGGGCG TGTCGATCAG GCTCGAAGCC GGCGAGTCGC TCGCCATCCT CGGCCCCAGC GGCGCCGGCA AGAGCACGCT GGTGCGGCTG CTGATCGGAC TGTGGGCGCC GAGCCAGGGC CATGTGCGCC TGGACGGGGT CGACCTGTCG CGCTGGACGC GCGAGCAGAT CGGCCCGCAC ATCGGCTACA TGCCGCAGGA CGTCGAGCTG TTTGCCGGCA GCGTGGCCGA CAACATCGCC CGCATGGGCC CGGTCGACCC GGGCCTGGTG GTCGAGGCGG CCCAGCTCGC CGGCGTGCAC GAACTCGTCC TCGGCCTGCC CGACGGCTAC GACACCCAGG TCGACCCGAA CGCGGCGCTG CTGTCACCCG GACAGCGGCA ACGCATCGCG CTGGCGCGTG CGCTGTACGG CAATCCGAAG CTGGTGGTGC TCGACGAACC CAACGCCAAC CTCGACGGCG CCGGTGAACT GGCACTGGCC GAGACCCTCA AGCGCCTGCA GGGCAAGGCC ACCGTGGTGG TGGTGACGCA CCGCCAGACG CTGACCCAGC ACGTGCACAA GATGCTGGTC ATCGAAGGCG GCCGGCAGAC CCATTTCGGC CGCACCGACG AGGTGCTCGC CGCCCTGCGT GGCGGCCACG CGCCCGCCGG TGGCCAGGTC GTGTCGCTGG CCCGTGCGGC GCAAGCCGCC CAGGCAGCCC AAGCGGCCCC CGCCGCTCAA GCCAAGGTCT GA
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Protein sequence | MKSLLRTVAG FSMAINLLWL GPALFSLQVF DRVLTSQSQE TLLVLLLGLA IALVLVGALD FLRGRLQGVL GNIVNDAMAP EIARLSLAVA ARRQGAFTNE ALRDVGRLRA LFSSQGLVAV MDAPWALIFI AVIAVANLWL GLAALLSAVL MLGLAYANDR MTKQSIEKLQ KDAGASQRFL DQAMVNAEVA QAMGMADALV GRWNALSAKV ADLQDPVAQR SVAMASATRI ARQLTQVLMT ALGAWLVIRG EATPGVLIAS NMLLGRALQP VEQIVGSWKI MAEGRLAWRR LDPLMSEAFN RRPQMALPAP NGQLSTTGLV FRPQGSERTL LMGVSIRLEA GESLAILGPS GAGKSTLVRL LIGLWAPSQG HVRLDGVDLS RWTREQIGPH IGYMPQDVEL FAGSVADNIA RMGPVDPGLV VEAAQLAGVH ELVLGLPDGY DTQVDPNAAL LSPGQRQRIA LARALYGNPK LVVLDEPNAN LDGAGELALA ETLKRLQGKA TVVVVTHRQT LTQHVHKMLV IEGGRQTHFG RTDEVLAALR GGHAPAGGQV VSLARAAQAA QAAQAAPAAQ AKV
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