Gene Lcho_1761 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1761 
Symbol 
ID6162058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1891389 
End bp1893110 
Gene Length1722 bp 
Protein Length573 aa 
Translation table11 
GC content71% 
IMG OID641664523 
Producttype I secretion system ATPase 
Protein accessionYP_001790793 
Protein GI171058444 
COG category[R] General function prediction only 
COG ID[COG4618] ABC-type protease/lipase transport system, ATPase and permease components 
TIGRFAM ID[TIGR01842] type I secretion system ABC transporter, PrtD family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.0106544 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCAC TTCTGCGCAC CGTCGCCGGC TTTTCGATGG CGATCAACCT GCTCTGGCTC 
GGCCCGGCGC TGTTCAGCCT GCAGGTGTTC GACCGCGTGC TGACCAGCCA GAGCCAGGAA
ACGCTGCTGG TGCTGCTGCT CGGGCTGGCG ATCGCGCTGG TGCTGGTCGG CGCGCTCGAC
TTCCTGCGCG GCCGGCTGCA GGGCGTGCTC GGCAACATCG TCAACGACGC GATGGCGCCC
GAGATCGCCC GCCTCTCGCT GGCGGTGGCC GCGCGTCGCC AGGGCGCCTT CACCAACGAG
GCGCTGCGCG ACGTCGGCCG GCTGCGCGCG CTGTTCTCGT CGCAAGGCCT GGTGGCGGTG
ATGGACGCGC CCTGGGCGCT GATCTTCATC GCCGTGATCG CGGTGGCGAA CCTGTGGCTG
GGGCTGGCCG CGCTGCTCAG CGCGGTGCTG ATGCTGGGCC TGGCCTATGC GAACGACCGC
ATGACCAAGC AATCGATCGA GAAGCTGCAG AAGGACGCCG GCGCCAGCCA GCGCTTTCTC
GACCAGGCCA TGGTCAACGC CGAGGTGGCG CAGGCGATGG GCATGGCCGA CGCGCTGGTC
GGGCGCTGGA ACGCGCTCAG CGCCAAGGTC GCCGACCTGC AGGACCCGGT CGCGCAGCGC
TCGGTGGCGA TGGCCTCGGC CACCCGCATC GCCCGTCAGC TGACGCAGGT GCTGATGACC
GCGCTGGGCG CCTGGCTGGT GATCCGCGGC GAGGCCACGC CGGGCGTGCT GATCGCGTCG
AACATGCTGC TGGGCCGCGC ACTGCAGCCG GTCGAACAGA TCGTCGGCAG CTGGAAGATC
ATGGCCGAAG GGCGACTGGC CTGGCGCCGC CTCGATCCGC TGATGAGCGA GGCCTTCAAC
CGCCGGCCGC AGATGGCGCT GCCGGCGCCG AACGGCCAGC TCAGCACGAC GGGGCTGGTG
TTTCGCCCGC AGGGCAGCGA GCGCACGCTG CTGATGGGCG TGTCGATCAG GCTCGAAGCC
GGCGAGTCGC TCGCCATCCT CGGCCCCAGC GGCGCCGGCA AGAGCACGCT GGTGCGGCTG
CTGATCGGAC TGTGGGCGCC GAGCCAGGGC CATGTGCGCC TGGACGGGGT CGACCTGTCG
CGCTGGACGC GCGAGCAGAT CGGCCCGCAC ATCGGCTACA TGCCGCAGGA CGTCGAGCTG
TTTGCCGGCA GCGTGGCCGA CAACATCGCC CGCATGGGCC CGGTCGACCC GGGCCTGGTG
GTCGAGGCGG CCCAGCTCGC CGGCGTGCAC GAACTCGTCC TCGGCCTGCC CGACGGCTAC
GACACCCAGG TCGACCCGAA CGCGGCGCTG CTGTCACCCG GACAGCGGCA ACGCATCGCG
CTGGCGCGTG CGCTGTACGG CAATCCGAAG CTGGTGGTGC TCGACGAACC CAACGCCAAC
CTCGACGGCG CCGGTGAACT GGCACTGGCC GAGACCCTCA AGCGCCTGCA GGGCAAGGCC
ACCGTGGTGG TGGTGACGCA CCGCCAGACG CTGACCCAGC ACGTGCACAA GATGCTGGTC
ATCGAAGGCG GCCGGCAGAC CCATTTCGGC CGCACCGACG AGGTGCTCGC CGCCCTGCGT
GGCGGCCACG CGCCCGCCGG TGGCCAGGTC GTGTCGCTGG CCCGTGCGGC GCAAGCCGCC
CAGGCAGCCC AAGCGGCCCC CGCCGCTCAA GCCAAGGTCT GA
 
Protein sequence
MKSLLRTVAG FSMAINLLWL GPALFSLQVF DRVLTSQSQE TLLVLLLGLA IALVLVGALD 
FLRGRLQGVL GNIVNDAMAP EIARLSLAVA ARRQGAFTNE ALRDVGRLRA LFSSQGLVAV
MDAPWALIFI AVIAVANLWL GLAALLSAVL MLGLAYANDR MTKQSIEKLQ KDAGASQRFL
DQAMVNAEVA QAMGMADALV GRWNALSAKV ADLQDPVAQR SVAMASATRI ARQLTQVLMT
ALGAWLVIRG EATPGVLIAS NMLLGRALQP VEQIVGSWKI MAEGRLAWRR LDPLMSEAFN
RRPQMALPAP NGQLSTTGLV FRPQGSERTL LMGVSIRLEA GESLAILGPS GAGKSTLVRL
LIGLWAPSQG HVRLDGVDLS RWTREQIGPH IGYMPQDVEL FAGSVADNIA RMGPVDPGLV
VEAAQLAGVH ELVLGLPDGY DTQVDPNAAL LSPGQRQRIA LARALYGNPK LVVLDEPNAN
LDGAGELALA ETLKRLQGKA TVVVVTHRQT LTQHVHKMLV IEGGRQTHFG RTDEVLAALR
GGHAPAGGQV VSLARAAQAA QAAQAAPAAQ AKV