Gene Lcho_1760 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1760 
Symbol 
ID6162057 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp1890024 
End bp1891385 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content70% 
IMG OID641664522 
ProductHlyD family type I secretion membrane fusion protein 
Protein accessionYP_001790792 
Protein GI171058443 
COG category 
COG ID 
TIGRFAM ID[TIGR01843] type I secretion membrane fusion protein, HlyD family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.00764259 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAACTGC CCGCTCTTGC TCCGTCACCG CGTGACGCCC AATTCGACCT CGTCGGCCAG 
CACCTCGCCA AGGCCCGCGC CATCACCCGC CAGGGCCGGC TGATCGGCGG CGTGCTGCTG
CTGCCGGCAC TGGCCTGGCT GAGCTTTGCG CCGCTGGCCT CGGCGGTGGT GGCCTCGGGC
CACGTCAAGG TCGACCTCAA CCGCAGCATC GTCCAGCACG CCGAAGGCGG CACGGTGCGC
GCCGTCTACG TGCGCGACGG CCAGAAGGTG CGTGCCGGCG ATCCGCTGAT CGAACTCGGC
GACGTCTCGG TCAACGCCGA CAAGACCCGC CTGATGCAGC GCCTGCTGGC CGAACGCGCC
GGCCTGGCGC GGCTCGAAAC CGAGCAGGCC GGTGGCAAGA CGCTGGCCTA CCCGCCCGAG
CTGATCGCCG CCGGCCGCGA CGACCCGGTG GTGCGCGAGC ACATGGACAA GGAACTGGCG
CTGTTCACCG CCCGCCTGCA CGCGCTCGAC AGCCAGGCCG GCCTGCTGGT CAAGCAGCGC
GCCAAGATCC AGCAGGAGAT CGCCTCGCTG CAGGCCCAGA TCGGCAACGC GCGCGACTCG
ATCCAGGCGC AGTCGCGCGA GCTGGCGCTC AACACCAGCC TGGCCAAACA GGGCCTGGTG
TCCGAGACCC AGGTGATGCA GCTCGAAGCC TCGATCGCCG ACTACCGCGG CAAGATGGCC
GAACGCAGCG CCGAGATGGC GCGCGCCGAC CAGCGCATCG GCGACATCGA ACTGCGCCTG
AGCCAGAGCC GCAACGACTA CCGCCAGCAG GCCAGCGACC AGCTCAAGGT CGCCAACGTG
CGGGTGCAGG AGATCGAGCA GGAGCTGCGC AAGGCCACCG ACGCGTCCAA GCGCCAGGTG
CTGAGCGCCT CGGTCGACGG CGAGGTGATC GGCCTGCGCA TCACCTCGCC GGGTGGCGTG
ATCGCGCCAC GCGAGCCGGT CGGCGAGATC GTGCCGGCCA ATCCGCGCCT GGTGGTCGAG
GCGCAGATCC GCACCGAGGA CATCAACCGC GTGCAGCGCG GCCAGGGCGC CGACCTGCGC
TTCACCGCTT TCAAGTACCG CACCACGCAG ATGGTCAAGG GCTCGGTCAG CTACGTCGGC
GCCGACCGTC AGGTCGACAA GGACAACGGC ATGGCCTATT ACGTCGTCAC CATCGACGTG
CCGCCCGACG CGATCGAACG GGCCGTCACC GGCGAGGCCC ACGCCCGGCT GCAGGCGGGC
ATGCCGGCCG AGGTCTATCT GCACGGCGAG GAACGCACGC CGCTGCAATA CCTGATGGAG
CCGATCACCC AGGTGATGCG GCGCGCCGGG CGCGAGCGCT GA
 
Protein sequence
MQLPALAPSP RDAQFDLVGQ HLAKARAITR QGRLIGGVLL LPALAWLSFA PLASAVVASG 
HVKVDLNRSI VQHAEGGTVR AVYVRDGQKV RAGDPLIELG DVSVNADKTR LMQRLLAERA
GLARLETEQA GGKTLAYPPE LIAAGRDDPV VREHMDKELA LFTARLHALD SQAGLLVKQR
AKIQQEIASL QAQIGNARDS IQAQSRELAL NTSLAKQGLV SETQVMQLEA SIADYRGKMA
ERSAEMARAD QRIGDIELRL SQSRNDYRQQ ASDQLKVANV RVQEIEQELR KATDASKRQV
LSASVDGEVI GLRITSPGGV IAPREPVGEI VPANPRLVVE AQIRTEDINR VQRGQGADLR
FTAFKYRTTQ MVKGSVSYVG ADRQVDKDNG MAYYVVTIDV PPDAIERAVT GEAHARLQAG
MPAEVYLHGE ERTPLQYLME PITQVMRRAG RER