Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_1760 |
Symbol | |
ID | 6162057 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 1890024 |
End bp | 1891385 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641664522 |
Product | HlyD family type I secretion membrane fusion protein |
Protein accession | YP_001790792 |
Protein GI | 171058443 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.00764259 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCAACTGC CCGCTCTTGC TCCGTCACCG CGTGACGCCC AATTCGACCT CGTCGGCCAG CACCTCGCCA AGGCCCGCGC CATCACCCGC CAGGGCCGGC TGATCGGCGG CGTGCTGCTG CTGCCGGCAC TGGCCTGGCT GAGCTTTGCG CCGCTGGCCT CGGCGGTGGT GGCCTCGGGC CACGTCAAGG TCGACCTCAA CCGCAGCATC GTCCAGCACG CCGAAGGCGG CACGGTGCGC GCCGTCTACG TGCGCGACGG CCAGAAGGTG CGTGCCGGCG ATCCGCTGAT CGAACTCGGC GACGTCTCGG TCAACGCCGA CAAGACCCGC CTGATGCAGC GCCTGCTGGC CGAACGCGCC GGCCTGGCGC GGCTCGAAAC CGAGCAGGCC GGTGGCAAGA CGCTGGCCTA CCCGCCCGAG CTGATCGCCG CCGGCCGCGA CGACCCGGTG GTGCGCGAGC ACATGGACAA GGAACTGGCG CTGTTCACCG CCCGCCTGCA CGCGCTCGAC AGCCAGGCCG GCCTGCTGGT CAAGCAGCGC GCCAAGATCC AGCAGGAGAT CGCCTCGCTG CAGGCCCAGA TCGGCAACGC GCGCGACTCG ATCCAGGCGC AGTCGCGCGA GCTGGCGCTC AACACCAGCC TGGCCAAACA GGGCCTGGTG TCCGAGACCC AGGTGATGCA GCTCGAAGCC TCGATCGCCG ACTACCGCGG CAAGATGGCC GAACGCAGCG CCGAGATGGC GCGCGCCGAC CAGCGCATCG GCGACATCGA ACTGCGCCTG AGCCAGAGCC GCAACGACTA CCGCCAGCAG GCCAGCGACC AGCTCAAGGT CGCCAACGTG CGGGTGCAGG AGATCGAGCA GGAGCTGCGC AAGGCCACCG ACGCGTCCAA GCGCCAGGTG CTGAGCGCCT CGGTCGACGG CGAGGTGATC GGCCTGCGCA TCACCTCGCC GGGTGGCGTG ATCGCGCCAC GCGAGCCGGT CGGCGAGATC GTGCCGGCCA ATCCGCGCCT GGTGGTCGAG GCGCAGATCC GCACCGAGGA CATCAACCGC GTGCAGCGCG GCCAGGGCGC CGACCTGCGC TTCACCGCTT TCAAGTACCG CACCACGCAG ATGGTCAAGG GCTCGGTCAG CTACGTCGGC GCCGACCGTC AGGTCGACAA GGACAACGGC ATGGCCTATT ACGTCGTCAC CATCGACGTG CCGCCCGACG CGATCGAACG GGCCGTCACC GGCGAGGCCC ACGCCCGGCT GCAGGCGGGC ATGCCGGCCG AGGTCTATCT GCACGGCGAG GAACGCACGC CGCTGCAATA CCTGATGGAG CCGATCACCC AGGTGATGCG GCGCGCCGGG CGCGAGCGCT GA
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Protein sequence | MQLPALAPSP RDAQFDLVGQ HLAKARAITR QGRLIGGVLL LPALAWLSFA PLASAVVASG HVKVDLNRSI VQHAEGGTVR AVYVRDGQKV RAGDPLIELG DVSVNADKTR LMQRLLAERA GLARLETEQA GGKTLAYPPE LIAAGRDDPV VREHMDKELA LFTARLHALD SQAGLLVKQR AKIQQEIASL QAQIGNARDS IQAQSRELAL NTSLAKQGLV SETQVMQLEA SIADYRGKMA ERSAEMARAD QRIGDIELRL SQSRNDYRQQ ASDQLKVANV RVQEIEQELR KATDASKRQV LSASVDGEVI GLRITSPGGV IAPREPVGEI VPANPRLVVE AQIRTEDINR VQRGQGADLR FTAFKYRTTQ MVKGSVSYVG ADRQVDKDNG MAYYVVTIDV PPDAIERAVT GEAHARLQAG MPAEVYLHGE ERTPLQYLME PITQVMRRAG RER
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