Gene Lcho_1749 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_1749 
Symbol 
ID6161341 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp1868520 
End bp1869563 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content67% 
IMG OID641664509 
Productphenylalanyl-tRNA synthetase, alpha subunit 
Protein accessionYP_001790781 
Protein GI171058432 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0016] Phenylalanyl-tRNA synthetase alpha subunit 
TIGRFAM ID[TIGR00468] phenylalanyl-tRNA synthetase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.00909422 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACGATC TCGATACCCT GGTGAGCGCT GCGCAGGCGG ATTTCGCCGC CGCCACCACG 
CCGGCCCAGC TTGAAGATGC CAAGGCGCGT TTCCTCGGCA AGACCGGTCG CGTCACCGAG 
CTGCTCAAGG GCATGGCCGC GCTGACGCCC GATGAGAAGA AGACCCGCGG CGCCTCGATC 
AACGAGACCA AGCAGCGCAT CGAAGCCGCG CTCACGGCGC GTCGCCAGGC GCTGGCCGAG 
GCCGAGCTGC AGGCCCAGTT GAAGGCCGAG GCGCTCGACG TGACGCTGCC CGGTCGCCAG 
CGGGGTGTCG GCGGTCTGCA CCCGGTGTCG CGCACGCTCG AACGCATCGA GCAGATCTTC 
GGTTCGATGG GTTTCGATGT CGCCGACGGC CCCGAGATCG AGACCGACTG GTACAGCTTC 
ACCGCCCTGA ACAACCCGGA AAACCACCCG GCGCGTTCGA TGCAGGACAC CTTCTACGTC 
GACATGAACG ACGAGGCCGG CCGCCCGCTG TGCCTGCGCC CGCACACCTC GCCGATGCAG 
GTGCGTTACG CGCGCCAGCA CGCCGCGCTG CACGCCGGCA AGGACACGCT GCCCGAGATC 
CGCGTCATCG CGCCGGGCCG GACCTACCGC GTCGACAGCG ACGCCACCCA CTCGCCGATG 
TTCCACCAGT GCGAAGGCCT GTGGATCGGC GAGAACGTGT CGTTCAAGGA CCTGAAGTCG 
GTGTTCACCG ACTTCTTCCG TACCTTCTTC GAGACCGACG ACCTGGAACT GCGCTTCCGG 
CCGTCGTTCT TTCCGTTCAC CGAGCCGTCG GCCGAAGTGG ACATCGCGTT TGCGTCCGGC 
CCGCTCAAGG GCCGCTGGCT CGAGGTGGCC GGCTCCGGCC AGGTACACCC GAACGTGGTG 
CGCAACTTCG GCCTCGACCC CGAGCGCTAC ATCGGTTTCG CCTTCGGCAT GGGCCCGGAT 
CGCCTGACGA TGCTGCGTTA CGGCGTCAAC GACCTGCGCC TGTTCTTCGA AGGCGACCTG 
CGCTTCCTGA GCCAGTTCAA GTAA
 
Protein sequence
MNDLDTLVSA AQADFAAATT PAQLEDAKAR FLGKTGRVTE LLKGMAALTP DEKKTRGASI 
NETKQRIEAA LTARRQALAE AELQAQLKAE ALDVTLPGRQ RGVGGLHPVS RTLERIEQIF 
GSMGFDVADG PEIETDWYSF TALNNPENHP ARSMQDTFYV DMNDEAGRPL CLRPHTSPMQ 
VRYARQHAAL HAGKDTLPEI RVIAPGRTYR VDSDATHSPM FHQCEGLWIG ENVSFKDLKS 
VFTDFFRTFF ETDDLELRFR PSFFPFTEPS AEVDIAFASG PLKGRWLEVA GSGQVHPNVV 
RNFGLDPERY IGFAFGMGPD RLTMLRYGVN DLRLFFEGDL RFLSQFK